Did you miss the phrase "reproductively isolated"? I specifically typed and spell-checked those letters so that you could ignore them and their import. I'm glad to see that you did, indeed, ignore a vitally important part of the point I was making.
Your citation that there are several other strains to be found in our genomes also means by definition that these strains were not reproductively isolated from our (strain, species, lumpy splits or splitty lumps?) of apes.
My training was in considering "species" as a morphological concept ("genetics was for the Zoology department on a different campus, not for Geology students), but even then, in the mid-80s, we were well aware that we could be splitting (for example) a sexually dimorphic species into two, and also had to pay attention to "provincialism" (morphological variations between members of the same species in different regions) as a possibility when considering whether to "lump" two specimens into one species, or split them into two. An introductory lab exercise was "Here are boxes each containing a couple of hundred fossils per group of 4 - divide yourselves appropriately - all from the same bed in the same quarry. (Mid-Jurassic, for what it's worth.) Without consulting your text books, and without discussing between groups, assess the number of species in each collection." Which is applying the morphological species concept in a laboratory setting.
At that time, we had no anticipation that archaeology (verging on the closest shores of palaeontology) would ever get access to genetic information. That is why it literally wasn't on the curriculum. Though my home area was watching the application of "DNA fingerprinting" to a couple of local rape cases - you may have heard of the developments in this since. This "genetics" thing was of some importance, if of no relevance to palaeontology.
3 Species are considered proven, Homo Sapiens, Home Neanderthalis and Denisovans.
That very question is the point - are they 3 species, or one species with regional variation? Yes, I did see the claim that the skull assigned to Homo longi, and I said at the time that "that is going to be a beautiful argument point between the morphological species concept and the genetic species concept. That is going to be in textbooks for generations." As, indeed, you are proving.
Where, in the published formal literature, do you see an assertion that "this genome and this (these) body fossil(s) are the holotype(s) for a species which we are erecting called Homo denisova spec.nov. ..." Because that is what "declaring a new species requires" - a holotype, a description (emphasising differentiation from pre-existing similar species) and a unique species name. (Assignment to a genus is common, but not required ; assignment to a new genus is rarer, but still common ; all higher taxonomic levels are matters of debate and opinion, and get revised on a regular basis. Which is why you generally cite whose definition (of what date ; people change their opinions with new evidence) you are using for any particular higher-level taxonomy.) [People sometimes re-use species names, but try to keep them unique within a taxonomic branch. But it's not good practice. And with search engines, it is pointless these-decades. there is no shortage of words available, even if your linguistics are lacking.]
When the Denisova genome was detected and announced, the authors (Paabo and associates, IIRC) explicitly stated that they were not asserting a new species. Which is why, if the association between the Homo Longhi body fossil and the genomes from Denisova (and several other sites, plus modern SE Asian populations) is accepted, then it is the Homo Longhi name that the genome will be attached to. The genomic data was uploaded to Genebank, MolbioBank, or something similar. I'm not sure that genetics has got to the point of having rulebooks as comprehensive as the ICZN and the botanists. Since it's pushing a century that the ICZN have had a rulebook, maybe now would be a suitable time for the geneticists to get their databases and practices into some sort of rulebook. IANAgeneticist ; they might have done so already.