Best Accounting Software for Shopify

Find and compare the best Accounting software for Shopify in 2026

Use the comparison tool below to compare the top Accounting software for Shopify on the market. You can filter results by user reviews, pricing, features, platform, region, support options, integrations, and more.

  • 1
    FreshBooks Reviews
    Top Pick

    FreshBooks

    FreshBooks

    $6.30/month
    5,477 Ratings
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    Looking to expand your business without the stress? FreshBooks equips you with tools to make informed financial choices. Access tailored, up-to-the-minute reports that highlight potential risks and opportunities, all while maximizing your tax deductions. Start your free trial today or enjoy a 70% discount on FreshBooks right now!
  • 2
    Xero Reviews
    Top Pick

    Xero

    Xero

    $20/month
    5,869 Ratings
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    Xero is a robust cloud-based accounting solution designed specifically for small enterprises. With Xero, users can efficiently handle their cash flow, monitor expenditures, process online payments, and access a wide range of additional features—all within the Xero platform.
  • 3
    Odoo Reviews
    Top Pick

    Odoo

    Odoo

    $25.00/month/user
    1,641 Ratings
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    Odoo is an open-source, fully customizable and extensible software that includes hundreds of professionally designed business applications. Odoo's intuitive database can meet most business needs including CRM, Sales, Projects, Manufacturing, Inventory, Accounting, and Accounting. Odoo is a software solution that can be used to meet all company needs, regardless of size or budget. Odoo's seamless design makes it easy for businesses to become more efficient and save time. Each module is interconnected to offer a seamless experience from one app to the next. Users can automate many tasks that would otherwise require manual inputs to multiple applications. Odoo enables teams to collaborate with each other from one platform, allowing them to keep all business functions in one place.
  • 4
    Striven Reviews

    Striven

    Miles IT

    $35/month per user
    232 Ratings
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    Striven is comprehensive business management software that reduces your expenses, enhances your workflows, and simplifies daily operations. Keep your company's information unified, integrated, and actionable. With more than 20 years of experience in Software Services, we've partnered with over 8,600 organizations across numerous industries to help them create operations that are more protected, streamlined, and beneficial to their clients. Our mission has always centered on helping people achieve more. Today, that mission drives everything in our software. We provide clear, uncomplicated pricing options and a guarantee you won't find anywhere else. You can begin using it today without spending a dime. None of our plans include trials, time limits, or binding contracts.
  • 5
    SAP S/4HANA Cloud Public Edition Reviews

    SAP S/4HANA Cloud Public Edition

    Navigator Business Solutions, SAP Partner

    4,265 Ratings
    SAP Cloud ERP is an enterprise-grade ERP platform designed for organizations that need real-time control, predictable operations, and a modern cloud foundation without the cost and complexity of traditional systems. Built on SAP HANA’s in-memory architecture, it delivers instant visibility across finance, supply chain, manufacturing, and procurement, enabling teams to make accurate, data-driven decisions at speed. This solution provides continuous, automated updates and built-in best practices so companies can adopt new capabilities without disruptive upgrade cycles. Embedded AI, machine learning, and advanced analytics support intelligent automation, scenario planning, and risk reduction across every operational process. Native integration with SAP Business Technology Platform and a broad ecosystem of enterprise applications ensures extensibility without customization-heavy technical debt. SAP Cloud ERP (SAP S/4HANA Cloud Public Edition) is engineered for organizations seeking the benefits of standardization, faster time-to-value, and global scalability. Its secure, multi-tenant cloud architecture ensures consistent performance, regulatory compliance, and lower total cost of ownership. With strong support for manufacturing, distribution, and service-centric operations, it equips IT and business leaders with a reliable platform to simplify their landscape, eliminate legacy bottlenecks, and power sustainable long-term growth.
  • 6
    SuiteMaster Reviews

    SuiteMaster

    Rithom Consulting LLC

    SuiteMaster – Modular ERP & CRM to Power Business Growth SuiteMaster is a cloud-based, modular ERP system built for small and mid-sized companies that want to run their entire business from one platform. Its flexible design lets you start with the essentials and expand as your needs grow—choosing from a wide range of integrated modules like CRM, Marketing Automation, HR, Accounting, E-Commerce, Inventory, Manufacturing, Project Management, and many more. Each module works seamlessly with the core platform, helping you eliminate the headaches and costs of disconnected tools. Real-time data sharing keeps every department aligned, whether your team is in the office or remote. With SuiteMaster, you can improve collaboration, automate routine tasks, and make faster, more informed decisions. The platform can be fully customized—from workflows and reporting to user interfaces—so it fits the way your organization operates. For partners, consultants, and resellers, SuiteMaster’s white-label program makes it easy to offer a complete ERP solution under your own brand. Ideal for industries as varied as manufacturing, retail, professional services, non-profits, education, and beyond, SuiteMaster delivers enterprise-grade functionality without the high costs—helping businesses work smarter, grow faster, and stay competitive.
  • 7
    NolaPro Reviews
    NolaPro is an ERP-level accounting, order tracking, inventory, and payroll system developed in Linux that can compete with much more expensive options. It can be customized and scaled to fit any business size, unlike any other accounting program. Cloud version is available for those who prefer a more hands-off approach. However, it can be downloaded locally on Windows and Linux platforms for those who prefer greater control and security. Fulfillment & Service Order Management, AP and AR, CRM, General Ledger. Payroll, Timeclock, B2B Portal (for secure client invoicing payments) and integration to many 3rd-party apps. Or request your own! NolaPro supports multi-currency and offers tons of options & additional features. It also comes fully loaded with more than 150 standard reports. CNet, Entrepreneur Magazine, TechRepublic and The Linux Journal all agree that NolaPro offers flexibility, features, and pricing that provide unmatched value and efficiency in managing your business.
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    aACE Reviews
    Top Pick

    aACE

    aACE Software

    $99/month/user
    7 Ratings
    aACE is a powerful business management software with over 20 years of development built-in. Designed for small-to-midsized businesses to efficiently manage their operations in one comprehensive solution, we’ve worked closely with our customers to refine the features that are the most important to daily users. aACE includes comprehensive tools for sales, operations, and accounting, offering deep visibility into your organization. The robust user permissions allow you to manage which data any of your employees can access. Consequently, customers have told us that aACE reduces the amount of time they've spent looking for information or on inter-office communication by as much as fifty percent (50%). aACE is available either as an on-premise solution or a cloud-based business management software. aACE also offers affordable customization in order to fit each company's special workflows, supporting what sets you apart from your competitors. Looking to automate more of your business processes? aACE provides extensive automation capabilities to improve CRM, accounting, and operational efficiencies, eliminating duplication and, in most cases, the need for additional labor to accomplish your company's performance goals.
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    Acumatica Cloud ERP Reviews
    Top Pick
    Best-in-Class Business and Industry Functionality: Propel your business forward with accurate data collection, robust financial analyses, and precise forecasting capabilities. Acumatica Cloud ERP serves as a centralized data repository, gathering information from every department under a single pane of glass. So, all business processes are clearly organized and authorized employees have access to the same, real-time data—anytime, anywhere, from any web-enabled device. Acumatica is the only business management solution designed for the unique and evolving needs of growing midmarket companies, enabling its customers to put their customers’ success at the heart of all operations. Its future-proof platform drives value and provides the flexibility, efficiency, and remote collaboration capabilities modern businesses need. Enjoy automation without complexity, compliance without rigidity, and continuous improvement without unpredictability.
  • 10
    Plus & Minus Reviews

    Plus & Minus

    Plus & Minus Software

    $1000.00/one-time/user
    Plus & Minus, an integrated enterprise resource planning (ERP), financial platform, is built around a single file system. Plus & Minus offers collaborative tools for accounting and purchasing, managing sales, reporting operations, and other functions. Plus & Minus allows users to track sales, manage core finance operations, create custom business reports, and monitor documents. Plus & Minus allows users to deploy on-premises or in the cloud.
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    WinMan ERP Reviews

    WinMan ERP

    WinMan ERP Software

    WinMan ERP software is a powerful, scalable solution tailored for manufacturers and distributors. It enhances productivity, profitability, and efficiency by providing real-time insights, reducing waste, and eliminating duplicate tasks. Designed for businesses with complex manufacturing and distribution needs, WinMan adapts to changing circumstances and supports growth. As the Authors of our ERP solutions, we prioritise efficiency and flexibility, enabling informed decision-making and operational peace of mind.
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    QuickBooks Online Reviews
    Top Pick

    QuickBooks Online

    Intuit

    $9/month (normally $15/month)
    45 Ratings
    QuickBooks Online is the most widely used accounting software in the entire world. QuickBooks Online simplifies accounting. Accounting software for small businesses that is #1 makes it easy to track receipts, income, transactions and more. You can take photos of receipts to link them with expenses. Our agents are available to answer any questions you may have about QuickBooks. Keep your business running smoothly by using the apps that you love. QuickBooks Online is compatible with PCs, Macs, tablets and phones. Click the link to get a 30-day free trial, and 50% off for your first three months. QuickBooks is more than just accounting software. QuickBooks helps you keep track of your income and expenses so that you can prepare for taxes. Customers save an average of $3,534 per year. Need more help? QuickBooks Live helps you to stay organized and ready for tax season. QuickBooks Mobile is a mobile application that helps you run your business anywhere, anytime.
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    Avaza Reviews
    Top Pick

    Avaza

    Avaza Software

    $11.95/month
    28 Ratings
    Avaza is an innovative cloud-based tool designed to enhance professional services automation, facilitating seamless project collaboration, efficient resource scheduling, comprehensive time and expense tracking, retainer management, and streamlined invoicing processes. This platform is widely relied upon by various teams across different sectors, as it consolidates vital business operations into a singular, effective solution. By offering an integrated all-in-one platform, Avaza eliminates the complications associated with having multiple subscriptions and redundant workflows. Its combination of project management, financial oversight, and retainer management equips businesses with immediate access to insights regarding project profitability, employee utilization, and retainer performance, all within a cohesive framework. The retainer management feature stands out by automating payment processes and applying credits for completed tasks, which fosters smooth billing practices, optimal resource distribution, and enhanced transparency throughout client engagements. Furthermore, Avaza is accessible on desktop, tablet, and mobile devices, granting organizations the ability to manage operations flexibly and efficiently from anywhere, thereby boosting productivity and collaboration among team members.
  • 14
    Synder Reviews
    Top Pick

    Synder

    Synder

    $39.99 per month
    22 Ratings
    Synder is an accounting software that small businesses can use. It offers high-quality support, 24/7 customer service, and advanced automated features. Once you have connected all your sales channels and payment platforms, Synder will provide automatic bookkeeping. This ensures accurate and error-free synchronization, categorization, live data reconciliation, and transaction data synchronization. Synder keeps accurate records of all your payment data, without duplications. The detailed and 100% accurate Profit and Loss Reports provide additional information that can be used to analyze your business' cash flow or budget planning. The software runs smoothly and is fully automated. You don't even need to log in. Synder allows you to apply sales taxes, taxes based upon location, shipping address, product names, etc. Customers are reminded of regular payments by recurring invoices. Synder offers a free trial to see the software in action.
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    AccountingSuite Reviews

    AccountingSuite

    AccountingSuite

    $5 per month
    5 Ratings
    Begin with the essential features you require, and rest assured that the complete package is accessible without the need for any additional purchases or upgrades. AccountingSuite™ provides outstanding online accounting software that features comprehensive inventory management capabilities. You can conveniently access your data from any location, whether using a tablet or a laptop. Collaborate seamlessly with employees, advisors, and accountants in a secure environment. Utilize multiple tabs for efficient multitasking, allowing you to work concurrently across various modules, including the general ledger and bank feeds. Monitor your inventory levels across a range of online stores to prevent product shortages and missed sales opportunities, thereby facilitating the growth of your eCommerce business. This software is adaptable to your organization's needs, whether you are just starting out or well-established. Designed to align with the daily operations of a growing business, AccountingSuite™ effortlessly integrates into your existing workflow and can be tailored to cater to your unique requirements. With its user-friendly interface and robust functionality, it ensures that you are always equipped to handle your financial tasks effectively.
  • 16
    Hurdlr Reviews
    Hurdlr is a mileage and expense tracker for self-employed entrepreneurs and freelancers. Auto-mileage tracking can be enabled to automatically capture tax-deductible business miles. You can also link your bank card or card to import possible expense deductions. Hurdlr estimates your self-employment taxes instantly, so you can see your true bottom line as well as when your payments are due. On average, tax deductions are worth $5600. Hurdlr users have saved over $300M and tracked $8B in their finances to date.
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    Versa Cloud ERP Reviews

    Versa Cloud ERP

    Versa Cloud ERP

    $1800 per year
    1 Rating
    Get the best cloud ERP for fast growing businesses today! Excel spreadsheets and other outdated software are no longer necessary for any business to succeed. Versa Cloud ERP is a new ERP software that eliminates spreadsheets, post-it notes and add-ons. Versa is a modern, all-in-one software designed for inventory heavy manufacturing, distribution and e-commerce businesses that are rapidly growing. It is simpler than the older software used by larger competitors, but it is still powerful enough to be used in businesses like yours. Annual fees start at USD 1,800 per year for all the capabilities of Versa software, including financials, AR/AP manufacturing, inventory warehouse, shipping/receiving logistics, projects CRM, B2B/B2C electronic commerce and more. Winner: 2018 Stevie Gold , 2017 Best in Biz - Silver, 2017-FinancesOnline-Rising Star & Great User Experience , 2018 Software Advice-Front Runners
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    Avalara Reviews

    Avalara

    Avalara

    $50 per year
    1 Rating
    Avalara offers a robust and scalable cloud-based platform designed specifically for sales automation and tax compliance needs. This comprehensive solution caters to businesses that require precise sales tax calculations while adhering to a myriad of sales tax regulations. Among its premium offerings, Avalara provides features such as VAT calculations, filing of returns, integration with POS, CRM, and CMS systems, as well as management of exemption certificates, among others. By choosing Avalara, you can simplify the management of tax compliance, enhance accuracy, and seamlessly integrate it into your existing business infrastructure with just a few easy steps. Share the ERP, e-commerce platform, or accounting software you utilize and explain your current tax management process. Embrace a solution tailored to your business requirements today, ensuring you're well-prepared for any regulatory shifts that may arise in the future. This proactive approach will not only streamline your operations but also provide peace of mind as regulations evolve.
  • 19
    A2X Reviews
    Ecommerce accounting is challenging, A2X makes it easy by automatically importing your sales, expense and other fees direct into your accounting system. “Gold Standard” Accounting Accuracy for better business decisions Thousands of Accountants & Experts refer to A2X as the Gold Standard for ecommerce accounting: Precise, Reliable, and Automated. A2X organizes your books in a few clicks -- using the proper accrual method of accounting -- giving you a clear picture of how value is flowing through your business. With A2X, it's easier to make sense of your Amazon, Shopify, Walmart, eBay and Etsy financials. It's free to try and you can get set up in minutes.
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    Link My Books Reviews

    Link My Books

    Link My Books

    $17 per month
    1 Rating
    Let Link My Books handle the complex task of accurately tracking your Amazon sales, associated fees, VAT, and taxes, freeing up valuable hours each month that would otherwise be spent on bookkeeping. Many Amazon sellers struggle with properly managing their sales accounts, but Link My Books simplifies this process significantly. We organize your transactions from each Amazon payout into clear and manageable categories, and we even offer a default set of accounts to help you get going right away. If you prefer, you can also select from your own established accounts within Xero or QuickBooks. Don't just take our word for it; many users have reported impressive results from utilizing our integration with Xero for their Amazon finances. By integrating directly with Amazon Seller Central and either Xero or QuickBooks, Link My Books automates the often tedious accounting tasks related to your Amazon business, ensuring a seamless experience for sellers. This innovative solution empowers you to focus more on growing your business instead of getting bogged down by financial details.
  • 21
    SAP Business ByDesign Reviews

    SAP Business ByDesign

    Navigator Business Solutions

    $22 per/user/month
    1 Rating
    SAP Business ByDesign is an affordable, easy-to-use enterprise resource planning system (ERP) specifically designed for fast-growing small to mid-market businesses and subsidiaries of larger companies. From financials and inventory to customer relationship management and human resources, SAP Business ByDesign integrates all major aspects of your business for end-to-end visibility, added efficiency, and improved operational control. By serving as the nerve-center for your business, with all data flowing into a single, centralized system, SAP Business ByDesign enables real-time data access for faster, complete, more nimble decision-making. SAP Business ByDesign comes with workflows and best practices that help your business run operations more efficiently from Day 1. It also scales with your business, so you don’t have to change systems as you grow. Some of the key features of SAP Business ByDesign: Integrated system architecture that manages all your company dataSAP Business ByDesign Complete operational visibility and control End-to-end business process automation Precise real-time reporting and analytics Customization for business and industry-specific requirements Secure data access anytime, anywhere
  • 22
    Dinero Reviews

    Dinero

    Visma Dinero

    $245 per month
    Start using Dinero for free today and you can create your first invoice in under two minutes. Dinero is designed for those who prefer focusing on their primary business rather than on the complexities of bookkeeping. Our goal is to simplify your financial management. All aspects of your finances—income, expenses, profits, upcoming payments, VAT obligations, and more—are organized and clearly displayed within Dinero. You can manage your accounts and monitor your company's financial health while on the move. Simply snap a photo of your receipt and upload it to the secure Dinero cloud, eliminating the hassle of physical documents that can easily get lost or misplaced. Enjoy a seamless checkout experience as customers can pay using cards like Visa, Mastercard, Maestro, and Visa Electron, or opt for MobilePay. With Dinero, managing your finances has never been more straightforward or efficient.
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    SyncTools Reviews

    SyncTools

    SyncTools.io

    $9 per month
    Multi-Channel eCommerce Accounting Software SyncTools provides you with single accounting solutions for your retail and wholesale business. SyncTools platform is user-friendly and helps you create invoicing, automated data entry, synchronization of payroll, COGS, payment syncs, and balance sheet data. Accounting planning that is more accurate, Real-time financial reports, Accurate tracking of inventory, and Automated payment processing. Integrate seamlessly with accounting software QuickBooks, Xero and Sage.
  • 24
    ConnectBooks Reviews

    ConnectBooks

    ConnectBooks

    $24/month
    ConnectBooks is an advanced accounting software solution tailored to the needs of eCommerce sellers. Its seamless integration with QuickBooks Desktop, QuickBooks Online, QuickBooks Enterprise, and Xero facilitates effortless synchronization of financial data, empowering sellers to streamline their bookkeeping processes. By connecting with major eCommerce platforms like Amazon, Walmart, Shopify, and eBay, ConnectBooks enables sellers to consolidate their books and gain comprehensive insights into their business operations. One of ConnectBooks' key features is its advanced reporting capabilities, which provide sellers with the tools they need to analyze their performance effectively. Through detailed reporting on inventory tracking, sales, and profit calculations, ConnectBooks equips sellers with the insights necessary to identify growth opportunities and optimize their operations.
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    KashFlow Reviews

    KashFlow

    IRIS Software Group

    $7.00/month/user
    Manage your finances effortlessly with KashFlow, a highly acclaimed cloud-based accounting solution. Tailored for sole proprietors and expanding enterprises, KashFlow simplifies the accounting process, making it accessible and user-friendly, even for those without accounting expertise. With features ranging from creating quotes and invoices to handling payroll and generating reports, KashFlow ensures a straightforward experience that prioritizes ease of use. Whether you're a small business owner or an individual freelancer, this software is designed to meet your accounting needs seamlessly.
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