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Comment: Re:Does it really matter? (Score 2) 101

by JanneM (#43825767) Attached to: ARM In Supercomputers — 'Get Ready For the Change'

System and numerical libraries and compilers are of course written specifically for the machine. But user-level apps (and a lot of scientific computing uses finished apps) are ported across multiple systems.

Portability is not as big an issue as it was a generation ago, as most supercomputers basically are Linux machines today, and made to more or less look like a typical Linux installation from a user-application level, with a POSIX API; pthreads, OpenMP and OpenMPI; a standard set of numerical libraries; and often even gcc-compatibility in order to minimize the effort of porting. A notable exception is GPU-based machines (that are in the minority today, despite the OP assertion); they don't have a common API to write for, so using them is substantially harder at a user-level.

And at a user level (but unike system libs) porting or coding time very much matters. Let's say your project is going to need a month of wall-clock computing time during the course of a year or two. If switching to a GPU-based system would shrink that by 50% - two weeks - then the effort to move your model code, app, and libraries had better take less than two weeks of work or you're going to waste project time, not save it.

Comment: Re:Publication time are a lie (Score 1) 34

by Black Parrot (#43823617) Attached to: Human Stem Cell Cloning Paper Contains Reused Images

This isn't just misleading advertising. Many journals put the dates right on the paper in the publication. I've got one on my desk right now that says "Recieved: 29 November 2006 / Revised: 2 April 2007 / Accepted: 12 April 2007 / Published [...]".

Note that the second gap is much shorter, because if the initial submission was good, all that is needed is enough time to verify that the revision addresses all the issues raised by the reviewers during the first gap. If that's what the "4 days" refers to, it's a non-issue.

OTOH, if the first gap was only 4 days, there is cause for alarm. The publisher has to do a little preprocessing to figure out who would be appropriate reviewers, write them, wait for them to respond, try again if too many say no (or don't bother responding at all), then get the paper to the reviewers and allow them enough time to review it (often a month or more).

Comment: Re:In case you're wondering (Score 1) 34

by Black Parrot (#43823555) Attached to: Human Stem Cell Cloning Paper Contains Reused Images

It isn't the responsibility of reviewers or editors to ensure correctness or to catch fraud. The primary responsibility of editors and reviewers is to check whether a paper is potentially interesting to the readers of a journal. Its correctness is then determined by the community.

You vastly overstate the actual situation.

Reviewers are not expected to reproduce the author's work, but they are expected to check whether the authors did their homework, conformed to well known facts, provided sources for other claims, identified and justified assumptions, followed good experimental procedure, drew logical conclusions from their observations, and stated enough information in the paper so that readers can determine that all that stuff was actually done.

Unfortunately, reviewing is almost always voluntary work (something academic scientists are expected to do as part of their job, but far from top priority), so there is a tendency to get lazy and do a not-so-careful review, or delegate it to a graduate student, with a result that things that should have been caught sometimes aren't.

Working against that is the fact that the publisher usually gets 3-5 reviewers, so some catch what others miss.

You are correct, however, that going through this formal phase of peer review doesn't make a paper's claims true, and the post-publication peer review never really ends for a good paper. For example, people are still chewing on stuff Einstein published 100 years ago.

Comment: Re:In case you're wondering (Score 1) 34

by Black Parrot (#43823501) Attached to: Human Stem Cell Cloning Paper Contains Reused Images

In at least one case, the same image appears twice with different captions, and in several others, the labels contain the wrong data. So far, nobody is accusing the authors of intentional wrongdoing, but the incident does raise concerns about papers not being properly edited or reviewed before acceptance.

Don't know about Cell, but lots of journals have the authors submit the paper (including revisions) with all the images collected at the back, presumably a holdover from pre-electronic typesetting/layout techniques. So the case of one image appearing with two different captions, it's at least possible that the error was made by the publisher rather than the authors.

Comment: I thought Cell was a respectable rag. (Score 1) 34

by Black Parrot (#43823179) Attached to: Human Stem Cell Cloning Paper Contains Reused Images

In the paper, it is recorded that the journal Cell accepted this paper just 4 days after submission. Perhaps, under the circumstances, the pre-publication peer review had to be a little hasty?

Four days isn't long enough to hear back from reviewers whether they're willing to do it. Something is *seriously* wrong with this picture.

(No pun intended.)

Comment: Re:Government efficiency (Score 1) 250

by Black Parrot (#43823153) Attached to: Spain's New S-80 Class Submarines Sink, But Won't Float

Only because government ignored actual laws designed for those situations and decided to make it up as they went along. I have no idea why people let them get away with it.

Actually, a lot of it was because earlier in that decade our legislators foolishly repealed some laws that had been established during the Great Depression to prevent exactly this kind of thing.

Comment: Re:Government efficiency (Score 1) 250

by Black Parrot (#43823139) Attached to: Spain's New S-80 Class Submarines Sink, But Won't Float

When private enterprise screws up, you as a taxpayer don't have to foot the bill...

Oh wait.. that's the theory. It doesn't quite work though as we saw in 2008

It never worked that way. Private enterprise has to charge you enough for their products and services to make a profit after all their inefficiencies and screwups.

Comment: Re:patents vs. research? (Score 1) 120

When I first heard about establishment of this court I thought it sounded like a good idea because in theory it was going to put an end to crap like venue shopping for patent appeals.

When you establish a single court for an issue, they roam further than when you have a whole system of courts on it. Individual opinions become greatly magnified in there effect, as you essentially give up peer review.

Talk sense to a fool and he calls you foolish. -- Euripides

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