Here's what it says:
"If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program."
And:
"You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work"
And:
"You may not impose any further restrictions on the recipients' exercise of the rights granted herein."
So it would seem to me that an argument can be made that if patent restrictions by Ximpleware prevent you from using derivative works of VTD-XML then Ximpleware may not be distributed under the GPL. Since Ximpleware DID distribute it under the GPL, he either intended folks receiving a derivative work to have a license to the patent or he breached the GPL up front.
It also hurts their position that the only mention of patents on VTD-XML's GPL web site (http://vtd-xml.sourceforge.net/) is: "Although VTD-XML is protected by US patents 7133857, 7260652, and 7761459, as long as you abide by GPL, you don't have to worry about patent infringement."