Comment Clone != exact copy (Score 5, Insightful) 172
As we saw with Dolly the Sheep, a clone is not an exact copy of an animal. It may contain nearly all the DNA information but first this DNA may be damaged (if nothing else, shortened telomers) and second it may not contain all the exact matrilineal content. This include both midocondral DNA as well as an epigenetic controls the mother's cell line places on its DNA. It is possible someone could have take those into account and made the best possible approximation to those. But it also possible that the crucial developmental characteristics of a quarter horse are in those missing elements.
Thus at a minimum the Quarter horse association could reasonably say that unless the donor cell line is from a quarter horse, it is not a quarter horse. It would also be someone reasonable to say that even with that precaution the shortened telomers mean this is a genetically damaged quarter horse and they want to exclude it from breeding with genetically healthy quarter horses.