First, it's completely corrupt to fund the entire budget in one bill. That is what allows all this pork in the process.
Second, the Republicans have not had a chance to end Obamacare. We all know that with only the power of one house of congress they cannot repeal it.
Third, the Republicans have passed a bill funding all the rest of the government except the ACA (Obamacare)
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Obama says, "if you don't fund everything, then I won't allow the funding of anything." Seems like Obama is the one shutting down the government.
Seriously, this is a spending bill. The Republicans are within their rights to limit spending. (In this case, the ACA).. The Democrats are also within their power to say, "Well in that case I'm going to take my ball and go home." Not fund anything.
The Republicans ran on ending Obamacare. They won the House. The entire house was up for election. Only 1/3 of the Senate was up for election. They may have won the Senate too, if all members were up, but we'll never know. Anyway, seems the Rs have no choice, but to do what they were elected to do.