It's long, but that transcript is really worth a read. First the judge thoughtfully skewers every argument the government presents, and tries to get to the fundamental principles involved. Then he thoughtfully skewers every argument Apple presents and tries to get them to throw away all of the marketing nonsense and just say what they think the actual issues are. Then he takes it all into consideration and says he'll go try to find the proper balance in his ruling.
No matter how that case comes out, that's one judge who is doing his job.