Best Payroll Software for Shopify

Find and compare the best Payroll software for Shopify in 2025

Use the comparison tool below to compare the top Payroll software for Shopify on the market. You can filter results by user reviews, pricing, features, platform, region, support options, integrations, and more.

  • 1
    Xero Reviews
    Top Pick

    Xero

    Xero

    $20/month
    4,785 Ratings
    See Software
    Learn More
    Xero's payroll solution, featuring seamless integration with Gusto, offers an effortless payroll experience tailored for small enterprises. It automatically computes tax obligations, submits payroll taxes, and processes employee payments, guaranteeing adherence to federal, state, and local laws. By directly linking to your financial account, Xero keeps payroll information synchronized for precise accounting. With benefits including next-day direct deposits and automated tax submissions, Xero simplifies the payroll process, allowing you to save time and minimize administrative burdens.
  • 2
    NolaPro Reviews
    NolaPro is an ERP-level accounting, order tracking, inventory, and payroll system developed in Linux that can compete with much more expensive options. It can be customized and scaled to fit any business size, unlike any other accounting program. Cloud version is available for those who prefer a more hands-off approach. However, it can be downloaded locally on Windows and Linux platforms for those who prefer greater control and security. Fulfillment & Service Order Management, AP and AR, CRM, General Ledger. Payroll, Timeclock, B2B Portal (for secure client invoicing payments) and integration to many 3rd-party apps. Or request your own! NolaPro supports multi-currency and offers tons of options & additional features. It also comes fully loaded with more than 150 standard reports. CNet, Entrepreneur Magazine, TechRepublic and The Linux Journal all agree that NolaPro offers flexibility, features, and pricing that provide unmatched value and efficiency in managing your business.
  • 3
    QuickBooks Online Reviews
    Top Pick

    QuickBooks Online

    Intuit

    $9/month (normally $15/month)
    45 Ratings
    QuickBooks Online is the most widely used accounting software in the entire world. QuickBooks Online simplifies accounting. Accounting software for small businesses that is #1 makes it easy to track receipts, income, transactions and more. You can take photos of receipts to link them with expenses. Our agents are available to answer any questions you may have about QuickBooks. Keep your business running smoothly by using the apps that you love. QuickBooks Online is compatible with PCs, Macs, tablets and phones. Click the link to get a 30-day free trial, and 50% off for your first three months. QuickBooks is more than just accounting software. QuickBooks helps you keep track of your income and expenses so that you can prepare for taxes. Customers save an average of $3,534 per year. Need more help? QuickBooks Live helps you to stay organized and ready for tax season. QuickBooks Mobile is a mobile application that helps you run your business anywhere, anytime.
  • 4
    FreshBooks Reviews
    Top Pick
    FreshBooks makes billing and invoicing for small businesses easy. Freshbooks is a top-rated accounting and invoice software for self-employed professionals as well as small businesses. It makes it easy to invoicing and billing so that companies can concentrate on the work they love. It has a wide range of powerful features, including expense tracking, time tracking and payment processing. The Freshworks mobile app allows users to work from anywhere using Freshbooks.
  • 5
    Rippling Reviews
    Rippling streamlines HR, payroll, IT, and spend management for global businesses. Effortlessly manage the entire employee lifecycle, from hiring to benefits administration to performance. Automate HR tasks, simplify approvals, and ensure compliance. Manage devices, software access, and compliance monitoring all from one dashboard. Enjoy timely payroll, expense management, and dynamic financial policies, empowering you to save time, reduce costs, and enhance efficiency in your business. Experience the power of unified management with Rippling today.
  • 6
    Razorpay Reviews
    Grow your business with finance. Accept payments from customers. Automate payments to vendors and employees. Never run out of working capital. You can mix and match products from Razorpay's Payment Suite to suit your business needs. Razorpay is the best way to integrate, onboard online, check out the features, and enjoy the best performance. Razorpay Payment pages is the easiest way for you to accept payments from a custom-branded online shop. Automated payment receipts allow you to accept international and domestic payments. Online shopping is easy with no code. Preparation is key! Hosted Event Registration allows you to quickly register attendees online and send them automated receipts. Fundraising for a worthy cause? Hosted Donations saves time and automatically sends 80G receipts.
  • 7
    KashFlow Reviews

    KashFlow

    IRIS Software Group

    $7.00/month/user
    Manage your finances effortlessly with KashFlow, a highly acclaimed cloud-based accounting solution. Tailored for sole proprietors and expanding enterprises, KashFlow simplifies the accounting process, making it accessible and user-friendly, even for those without accounting expertise. With features ranging from creating quotes and invoices to handling payroll and generating reports, KashFlow ensures a straightforward experience that prioritizes ease of use. Whether you're a small business owner or an individual freelancer, this software is designed to meet your accounting needs seamlessly.
  • 8
    MYOB Reviews

    MYOB

    MYOB

    $11/month
    MYOB Business is a robust cloud-driven software solution aimed at enhancing the financial and operational efficiency of small to medium-sized enterprises (SMEs). This platform encompasses an array of functionalities, such as invoicing, expense tracking, payroll management, inventory oversight, and compliance with tax regulations. Through its real-time financial reporting and intuitive dashboards, MYOB Business equips business owners with critical insights necessary for making well-informed choices. The software also facilitates smooth integrations with various banking systems, payment processors, and additional business applications, promoting automation and minimizing manual workloads. Renowned for its adaptability, MYOB Business is designed to support the evolving needs of expanding businesses by offering versatile pricing structures and customizable options tailored to different sectors. Moreover, its user-friendly interface ensures that even those with limited accounting experience can navigate the software with ease.
  • Previous
  • You're on page 1
  • Next