Best Payroll Software for Paychex Flex

Find and compare the best Payroll software for Paychex Flex in 2025

Use the comparison tool below to compare the top Payroll software for Paychex Flex on the market. You can filter results by user reviews, pricing, features, platform, region, support options, integrations, and more.

  • 1
    Xero Reviews
    Top Pick

    Xero

    Xero

    $2.90/month
    4,660 Ratings
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    Xero's payroll solution, featuring seamless integration with Gusto, offers an effortless payroll experience tailored for small enterprises. It automatically computes tax obligations, submits payroll taxes, and processes employee payments, guaranteeing adherence to federal, state, and local laws. By directly linking to your financial account, Xero keeps payroll information synchronized for precise accounting. With benefits including next-day direct deposits and automated tax submissions, Xero simplifies the payroll process, allowing you to save time and minimize administrative burdens.
  • 2
    Sage Intacct Reviews
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    Sage Intacct is a premier cloud-based financial management software designed for growing businesses. It offers comprehensive features including core financials, accounts payable and receivable, cash management, and multi-entity consolidations. The software automates key financial processes, enhancing efficiency and accuracy. Sage Intacct provides real-time financial insights through intuitive and customizable dashboards, enabling data-driven decision-making. Seamlessly integrating with various business applications, Sage Intacct ensures a unified view of operations, enhancing data consistency and collaboration across departments. Its robust reporting and analytics tools allow users to generate detailed financial statements, track key performance indicators, and gain deep insights into financial performance. Sage Intacct is scalable, reliable, and trusted by thousands of organizations worldwide. It supports complex organizational structures with multi-entity management, facilitating seamless consolidations and inter-entity transactions. The cloud-based platform ensures continuous innovation, keeping your financial management tools up-to-date. With award-winning customer support, Sage Intacct empowers businesses to streamline
  • 3
    QuickBooks Online Reviews
    Top Pick

    QuickBooks Online

    Intuit

    $9/month (normally $15/month)
    45 Ratings
    QuickBooks Online is the most widely used accounting software in the entire world. QuickBooks Online simplifies accounting. Accounting software for small businesses that is #1 makes it easy to track receipts, income, transactions and more. You can take photos of receipts to link them with expenses. Our agents are available to answer any questions you may have about QuickBooks. Keep your business running smoothly by using the apps that you love. QuickBooks Online is compatible with PCs, Macs, tablets and phones. Click the link to get a 30-day free trial, and 50% off for your first three months. QuickBooks is more than just accounting software. QuickBooks helps you keep track of your income and expenses so that you can prepare for taxes. Customers save an average of $3,534 per year. Need more help? QuickBooks Live helps you to stay organized and ready for tax season. QuickBooks Mobile is a mobile application that helps you run your business anywhere, anytime.
  • 4
    UZIO Reviews
    Top Pick

    UZIO

    UZIO

    $4.50 per user per month
    8 Ratings
    Technology changes, but our commitment to enabling American businesses and improving the employee experience in America will not. UZIO - UPLIFT YOUR HR & WORKFORCE MANAGEMENT Are your HR administration, payroll processing and benefits management processes being managed in silos or integrated? UZIO, a cloud-based SaaS platform, provides all-in-one HR, Payroll Benefits Management, and Time & Attendance solutions. It is designed for all businesses. Our platform allows businesses to reduce the burden of managing HR, payroll, benefits, and other administrative tasks in silos. This is self-serving.
  • 5
    GoCo Reviews
    GoCo is modern HR, benefits, and payroll, built for flexibility and ease-of-use in mind. Manage records, performance, time off, onboarding, benefits, and more all in one place. GoCo is a secure, compliant hub for sending, digitally signing, and organizing your sensitive HR documents and data. Unlike other HRIS platforms, GoCo is built to be flexible enough to support existing processes, policies, and providers, so you don't have to change the way you work just to adopt a modern HR system.
  • 6
    Finch Reviews

    Finch

    Finch

    $50 per connection/mo
    The world is moving towards more standardized, open, and interconnected data networks. However, the employment infrastructure is still complex, closed, fragmented. Our mission is to make it easier for everyone to have access to the infrastructure that supports the employment sector. We also aim to unlock new ideas and generate tremendous economic activity for both employees and employers. It is easy to connect to your payroll and HR systems. Employee data is scattered across many closed systems. Finch combines the differences between systems to unify access and support many innovative use cases. You can add new systems to your system and turn them on with one click. Employers can grant you access to their payroll system and HR system. Finch Connect makes this process fast, secure, compliant. We focus on the right abstractions and developer experience in order to create the most powerful API interface for payroll and human resources systems.
  • 7
    DailyPay Reviews
    DailyPay is powered by an industry-leading technology platform and is on a mission for a new financial system. DailyPay has partnered with America's top-ranked employers, such as Dollar Tree, Berkshire Hathaway, and Adecco to become the gold-standard for on-demand pay. DailyPay's massive data network, proprietary financing model, and connections to over 6,000 banking system endpoints allow it to ensure that money is always at the right place at the right moment for employers, merchants, and financial institutions. DailyPay is a technology company that aims to change the way money moves from the moment it starts. DailyPay's headquarters is in New York City and its operations are based in Minneapolis.
  • 8
    Omnipresent Reviews
    Omnipresent is the global EOR and PEO solution that empowers you to focus on growing a world-class business and team. As your Employer of Record, we make remote hiring easy for you anywhere in the world. We handle all employment administration and compliance duties in 160 countries, while equipping your employees with the tools and support they need to feel part of your team. Your time is valuable, and you need a partner to give you the flexibility to hire the best international talent, without having to set up a costly local entity.. ‍Employ Anywhere. Be Omnipresent.
  • 9
    Dapt Reviews
    Dapt seamlessly integrates payroll, accounting, time-tracking, and various other tools to ensure everything remains current and precise. With Dapt, you can monitor ongoing work and evaluate profitability, allowing for real-time adjustments. Your accounting team will no longer need to spend excessive hours seeking straightforward answers. Thanks to Dapt's strong compatibility with accounting platforms like QuickBooks, JobTread, MS Dynamics, Sage, and more, you receive accurate data every time you run payroll. By eliminating the need for spreadsheets and preventing double entries, Dapt saves over 40 hours each month. Additionally, Dapt automates job costing, rate calculations, and numerous repetitive processes, thereby reducing errors and the necessity for manual input. Customers of Dapt can select the payroll and time solutions that best suit their needs. At Dapt, our dedication lies in empowering our customers to thrive by offering precise and timely data. Beginning with the simplification of job cost accounting, we have developed a comprehensive, flexible, and user-friendly SaaS solution that caters to diverse business requirements. Our goal is to ensure that every aspect of your financial management is as streamlined and efficient as possible.
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