It could easily be a case of the left hand not knowing what the right hand is doing.
In the Reynolds case that established the state secrets privilege of the executive branch, the government fought hard to not disclose the accident reports that the widows of civilian contractors were trying to obtain to show that the government had been negligent in maintenance of the aircraft and that they should therefore receive substantial awards. The case started in 1949, and ran into 1953 before it was finally closed by the supreme court in favor of the government.
In the meantime, a routine review in 1950 declassified the disputed reports from "secret" to "restricted", which is the equivalent of FOUO, which would have allowed the use of the reports in the case. Everyone involved in the case, from the plaintiffs up to the supreme court, and including all witnesses, was unaware of the declassification, which wasn't discovered until the 2000's. The case ran to its conclusion with everyone involved continuing to believe that the documents were classified. The case went on to be the legal basis for all future claims of state secrets privilege by the executive branch.
ref:http://www.historycommons.org/timeline.jsp?civilliberties_patriot_act=civilliberties_state_secrets&timeline=civilliberties