How many people did capitalism kill 'directly or indirectly'?
Quick answer: not nearly as many.
Note: The figures above deal primarily with those of its own citizens communist countries have killed, through policy induced famines and political repression. Although the book does address those killed in communist initiated wars, that isn't the point here. Usually those who follow up with your retort would cite all those who died in all the wars of aggression initiated by capitalist countries in order to draw some kind of equivalency, but it is not equivalent. Let's leave war casualties off the table for both sides.
The issue is perhaps somewhat complicated by one's definition of capitalism, because while those who effected communist policies leading to mass death proudly waved the communist banner, conscious of their ideology, their supposed counterparts (Custer? English landlords?) were not consciously waving some "capitalist" flag. More likely they were motivated by a sense of strong nationalism, or outright robbery, which is not a necessary attribute of a conscious "capitalist" ideology at all (which is much more compatible with liberal internationalism).
Further, by "capitalist" do we mean only modern industrial capitalist countries? Usually bona fide Capitalism is not considered to have begun until some time in the Middle Ages, with the movement away from feudal institutions. If we want to call any market economy capitalist, including, for example, that of ancient Rome, then perhaps we can lay the many deaths brought about by the dysfunctional economic policies of the late emperors at the feet of "capitalism", but this is a stretch and rather nonsensical. Even very primitive tribal cultures often have rudimentary markets--shall they too be labelled capitalistic for the sake of consistency? All the deaths resulting from slavery too are difficult to pin on "capitalism" precisely for this reason. Slavery is an institution that predates capitalism, and has existed under a wide variety of both primitive and more "modern" economic circumstances. It has been practiced in some capitalist countries, but it is certainly not a defining attribute of capitalism or a necessary consequence of it (though a Marxist cynic may disagree, he'd be wrong--and just being spiteful), and was first driven out institutionally in England under an explicitly liberal/capitalist banner (if you don't believe me check the history yourself).
If we're talking about a country that is capitalist in the full sense (an industrialized market economy, i.e. one that has accumulated much capital), what are the episodes during which many died from following a capitalist policy rather than some superior "socialist" (or other) alternative? I'm prepared to accept that there may be such an example, but I doubt it approaches anything close to the massive and tragic waste of life that resulted in the last century's pursuit of communism.