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Average Ratings 0 Ratings

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ease
features
design
support

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Write a Review

Description

LigPlot+ serves as the advanced iteration of the original LIGPLOT software, designed for the automatic creation of 2D diagrams depicting ligand-protein interactions. This tool features a user-friendly Java interface that enables users to edit plots effortlessly through simple mouse click-and-drag actions. Besides the improved interface, LigPlot+ introduces several significant upgrades compared to its predecessor. When analyzing two or more ligand-protein complexes that share notable similarities, the software can automatically present their interaction diagrams either overlayed or side by side, with conserved interactions prominently highlighted for easy identification. Additionally, the LigPlot+ suite integrates an enhanced version of the original DIMPLOT program, which is focused on visualizing protein-protein or domain-domain interactions. Users have the flexibility to choose the specific interface they are interested in, allowing DIMPLOT to produce a detailed diagram that illustrates the residue-residue interactions within that interface. For further clarity in interpretation, the residues from one interface can also be displayed in their sequential order, enhancing the overall usability and functionality of the program. This comprehensive approach makes LigPlot+ a valuable tool for researchers seeking to understand complex molecular interactions more intuitively.

Description

Nanome serves as an interactive platform designed for collaborative molecular visualization and the exploration of drug discovery. Users can upload protein and small-molecule structures to examine together in a three-dimensional format, accessible through a web browser or various XR headsets such as the Meta Quest 3 and 3S, Apple Vision Pro, and Samsung Galaxy XR. In a shared session, all participants, including a chemist using a headset and a peer working from a laptop, can simultaneously focus on the same molecular feature, no matter their physical locations. The platform incorporates MARA, an AI copilot that efficiently performs docking, co-folding, electrostatics calculations, and ADMET predictions based on straightforward, natural language inputs, utilizing over 300 integrated scientific tools to provide 3D models for further examination. Additionally, Nanome supports a variety of file formats including PDB, mmCIF, SDF, MOL2, PyMOL, and Maestro, while also offering connectivity to platforms like Schrodinger LiveDesign, OpenEye, Cresset Flare, CDD Vault, KNIME, and Jupyter. For enterprises, deployment options include single-tenant or on-premises setups, enhancing security and control. A free web seat is available, along with a 14-day complete trial that requires no credit card for access. Overall, Nanome is revolutionizing how teams collaborate in the field of molecular science.

API Access

Has API No 

API Access

Has API No 

Screenshots View All

Screenshots View All

No images available

Integrations

No details available.

Integrations

No details available.

Pricing Details

No price information available.
Free Trial No 
Free Version No 

Pricing Details

$20.83/month/user (academic)
Free Trial Yes 
Free Version Yes 

Deployment

Web-Based No 
On-Premises No 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac Yes 
Linux Yes 
Chromebook No 

Deployment

Web-Based Yes 
On-Premises Yes 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac No 
Linux No 
Chromebook No 

Customer Support

Business Hours Yes 
Live Rep (24/7) No 
Online Support Yes 

Customer Support

Business Hours No 
Live Rep (24/7) No 
Online Support Yes 

Types of Training

Training Docs Yes 
Webinars Yes 
Live Training (Online) No 
In Person Yes 

Types of Training

Training Docs Yes 
Webinars Yes 
Live Training (Online) Yes 
In Person No 

Vendor Details

Company Name

EMBL-EBI

Country

United Kingdom

Website

www.ebi.ac.uk/thornton-srv/software/LigPlus/

Vendor Details

Company Name

Nanome

Founded

2015

Country

United States

Website

nanome.ai

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