Best Billing and Invoicing Software for QuickBooks Commerce

Find and compare the best Billing and Invoicing software for QuickBooks Commerce in 2026

Use the comparison tool below to compare the top Billing and Invoicing software for QuickBooks Commerce on the market. You can filter results by user reviews, pricing, features, platform, region, support options, integrations, and more.

  • 1
    Xero Reviews
    Top Pick

    Xero

    Xero

    $20/month
    5,869 Ratings
    See Software
    Learn More
    Xero's invoicing platform simplifies the billing process, providing your clients with a seamless and polished experience via both its desktop and mobile applications. Key features encompass customizable invoices, options for digital payments, automated reminders, and additional functionalities to enhance your invoicing experience.
  • 2
    QuickBooks Online Reviews
    Top Pick

    QuickBooks Online

    Intuit

    $9/month (normally $15/month)
    45 Ratings
    QuickBooks Online is the most widely used accounting software in the entire world. QuickBooks Online simplifies accounting. Accounting software for small businesses that is #1 makes it easy to track receipts, income, transactions and more. You can take photos of receipts to link them with expenses. Our agents are available to answer any questions you may have about QuickBooks. Keep your business running smoothly by using the apps that you love. QuickBooks Online is compatible with PCs, Macs, tablets and phones. Click the link to get a 30-day free trial, and 50% off for your first three months. QuickBooks is more than just accounting software. QuickBooks helps you keep track of your income and expenses so that you can prepare for taxes. Customers save an average of $3,534 per year. Need more help? QuickBooks Live helps you to stay organized and ready for tax season. QuickBooks Mobile is a mobile application that helps you run your business anywhere, anytime.
  • 3
    IntelliPay Reviews

    IntelliPay

    Convenient Brands

    **IntelliPay — Smarter Payment Processing That Protects Your Bottom Line** What if every payment your business accepted actually cost you less? For over two decades, U.S. organizations have used IntelliPay's cloud platform to modernize revenue collection, eliminate processing overhead, and give customers more ways to pay. **The Fee Problem, Solved:** Traditional processors leave businesses absorbing 2–4% per card transaction. IntelliPay's compliant dual pricing, surcharging, and convenience fee structures redistribute those costs without violating card brand rules — while traditional processing remains available for those who prefer it. **One Platform, Every Channel:** Credit card, ACH/eCheck, text-to-pay, IVR, kiosk, virtual terminal, EMV, and recurring autopay — all managed from one Google Cloud-hosted dashboard. No patchwork vendors, no duplicate reporting. **Built-In Automation:** Recurring billing, installment plans, autopay enrollment, bulk CSV processing, and payment reminders run without manual intervention — freeing staff for higher-value work. **Security & Compliance Included:** PCI DSS Level 1 certified, HIPAA and NACHA compliant, with end-to-end encryption, tokenization, and fraud detection built in. **Integrations:** REST API, QuickBooks Online sync, white-label portals, and compatibility with healthcare, legal, government, and e-commerce platforms. **Why IntelliPay:** - 20+ years in U.S. payment processing - Billions processed annually - Transparent interchange-plus pricing - U.S.-based support: phone, chat & portal
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