TitaniumFox's Journal: Molecular Biology / Scientific Online Resources

=== Misc. Scientific =========================
NIH - Computational Molecular Biology at NIH
PubCrawler - Spider/Alerting Service for PubMed and GenBank [free, source inc.]
Google - Biochemistry and Molecular Biology Directory
DMOZ - Open Directory Biochem & Mo Bio
Technische Universitaet Muenchen - Gene Quant & Real Time PCR
Gietz Lab - The Definitive Yeast Transformation Homepage
NU Med School - Oligo & Protein property calculators
EBI BioCatalog - Catalog of Mo Bio programs
Tuschl Lab - RNA, RNAi guide

=== Oligos ===============================
Primer3 - Primer / hybridization probe construction [free, source inc.]

=== DNA/RNA Secondary Structure =============
mfold - RNA & DNA folding server [free use academic / non-prof. license]

=== Commercial Site Collections ================
RNAture - OD260 Calc, Oligo Analyzer [Java]
IDT BioTools - Primer3, mfold, BLAST
Promega BioMath Calc - DNA & Temp Conversions & Conversion Factors
OligoEngine.com - shRNA [RNAi] / Oligo Construction Applet [Shockwave]

=== Open Source Software ===================
OBF - Open Bioinformatics Foundation [open java|perl|python|ODBC|etc. libs]
EMBOSS - European Molecular Biology Open Software Suite
WU-BLAST - Washington University BLAST
Librarian - OSS PubMed-like PDF repository (for local LANs)