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Comment Question for sequencing expert. (Score 4, Interesting) 128

How accurate is it for the media to say a "complete" genome was sequenced? I know a little molecular biology and have been lead to believe that certain types of DNA, (centromeres, telomeres, other such regions with lots of repetitive sequences or "fragile sites") are very hard to sequence reliably. Are these "swept under the rug" in a "complete" sequence? Perhaps a related question, how are non-coding regulatory portions of chromosomes handled in whole genome analysis?

Comment Re:so...... (Score 4, Insightful) 352

I won't speculate on the intentions of OC. But bringing up oil does raise a very legitimate item of concern. For much of the 20th century, petroleum has been the critical resource that drove or enabled much of our civilization and technical infrastructure. If we are going to look skyward, we have *GOT* to start thinking differently about the resource(s) that we are going to use. Unless big oil is willing to shell out the cash for researching the exploration and mining of hydrocarbons in the Jovian system, our government has got to step up and look at what we need to power space travel on an industrial scale.

Government

Why the FCC Will Probably Ignore the Public On Network Neutrality 336

walterbyrd writes The rulemaking process does not function like a popular democracy. In other words, you can't expect that the comment you submit opposing a particular regulation will function like a vote. Rulemaking is more akin to a court proceeding. Changes require systematic, reliable evidence, not emotional expressions . . . In the wake of more than 3 million comments in the present open Internet proceeding-which at first blush appear overwhelmingly in favor of network neutrality-the current Commission is poised to make history in two ways: its decision on net neutrality, and its acknowledgment of public perspectives. It can continue to shrink the comments of ordinary Americans to a summary count and thank-you for their participation. Or, it can opt for a different path.
Medicine

Ebola Has Made It To the United States 475

An anonymous reader sends news that the CDC has confirmed the first case of Ebola diagnosed on U.S. soil. An unnamed patient at Texas Health Presbyterian Hospital of Dallas was placed in isolation while awaiting test results for the dreaded virus. Apparently, the patient had traveled recently to a West African country, where the disease is spreading, and later developed symptoms that suggested Ebola. A blood specimen from the patient was sent to Centers for Disease Control and Prevention in Atlanta, a testing process that can take 24 to 48 hours to confirm an Ebola infection — or not. The results came back about 3:32 p.m. In other Ebola news, outbreaks in Nigeria and Senegal appear to be completely contained.

Comment Re:Tricky proposition (Score 1) 64

I don't think we're talking about the same things. Post-9/11, plenty of cool things have been done by talented IT professionals for the government in the name of national security. If it was desired badly enough, it was made to happen. I don't think cultural differences was much of an impediment that got us to the point we are today.

Comment Tricky proposition (Score 4, Insightful) 64

Having skimmed through the article, it seems to me the elephant in the room is being ignored. A much more compelling case can be made for the fact that too *much* information technology already at the disposal of the government is making it way too easy to abuse the American public. It isn't a question of funding, it is a question of priorities.

Comment Re: finds little... (Score 1) 269

The genes they identified were all proteins.

I'm not that much of an expert on microarrays, but I'm pretty sure most or all of the arrays they used predate the Encode project's results that made people re-evaluate the question of how much of the genome is really important. Here is a list of the arrays they used:

Illumina: HumanHap550, 318K, 350K, 610K, 660W Quad, HumanOmniExpressExome-8 v1.0, Human610 Quadv1, 370, 317, HumanOmniExpress-12v1 A

Affymetrix: GeneChip 6.0, 250K

This study was the keystone project of a consortium founded in early 2011. I think, given the size, it simply took this long to get the results. That, too, was a time before Encode publications had really started impacting the world. Whatever RNA genes they would have had at the time would be pathetic and paltry by comparison to what we consider worth studying now.

Comment Re: finds little... (Score 1) 269

We know that the most important distinctions between humans and other animals are in RNA genes, that most of the genome is transcribed as RNA genes and that the brain modifies itself using them and that malfunctions in them cause disease. This study ignored RNA genes entirely, AFAICT. Its mindset is about ten years out of date and simply reaffirms what everyone already assumed: proteins aren't everything. Intelligence probably still has a significant genetic component, this study just looks in the wrong place. (Psst: SNP studies are snake oil in almost all unsolved diseases.)

Comment Re: First (Score 1) 211

And then he created the arXiv, to guarantee that crackpots and armchair-surfing physicists would have a safe bunker from which to lob garbage at other scientific disciplines without ever having to step out from under the shade of their brethren. Until it's peer-reviewed, it's not newsworthy. For shame, Medium.

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