And it doesn't mean Java doesn't have serious flaws. There's something deeply ingrained in Java that encourages over-engineering. But every language has its pitfalls.
I don't think there's much in Java the language that encourages over-engineering; it's more in the community that surrounds Java. It's in the tutorials, and books, and code examples and discussion groups . It's in the frameworks and libraries.
The reality is that a "language" is as much shaped by the community that grows up around it as by the actual language itself. Perl doesn't have to be particularly unreadable, but the culture that grew up around perl in the late 90's that was obsessed with cute hacks, fewest keystrokes, and self created obscurity created a state where anyone learning perl was immersed in that culture and came out writing a lot of unreadable stuff. It is my understanding that since many of those programmers left perl for other languages perl has been remade as "Modern Perl" which is largely the same core language, just with a different and libraries, and is quite readable.
Conversely python can be made quite diabolical (just through together chains of nested list comprehensions and single character variables for example), but because it grew up with a culture of "one obvious way to do it" and readability most code you'll see tends to eschew such things, and strive to read like pseudo-code. Again, there's not that much inherent in the language, it's the cultural conventions surrounding the language that enforce much of that.
Java fell in with the Enterprise crowd, and consequently found itself immersed in a culture obsessed with design patterns and over-engineering. Had things gone a little differently with, say, in browser applets somehow becoming the primary driving force for java (let's assume they ran better say) then I doubt java would be known for over-engineering.
