Were these geologists negligent? Given our current understanding of earthquakes, we can off-handedly state, "probably not", but we aren't sure. Is it unreasonable for somebody to want a court to investigate further, given the scale and scope of the damage? Not really.
Not only that. People should understand some basics of the Italian law system before jumping to conclusions, making comparisons and pretending everyone is an idiot (I'm not referring to you).
When authorities are notified or simply become aware of crimes, they are obliged to investigate. In this case there were several accusations made by people and prosecutors were obliged to investigate. Just to give some more perspective, charges are for homicide and other related crimes. The researcher that was investigated in the past for saying there would have been an earthquake, was charged (if I remember correctly) for procured alarm to authorities (still a crime).
Beside the obligation to investigate, I also agree with you that is not necessarily unreasonable to investigate further. I'm pretty sure these guys will be discharged and the outcome of the trial may be helpful in future to prevent similar things to happen (both geologist trying to be less conservative and people being discouraged to make criminal accusations for nothing).
This helps to understand the technical part of it, but of course there's more: the political part.
Lately the civil protection department has gone through several scandals related to rebuilding activities of the area and it's close to the current government. Part of the population is pissed off because: they lost relatives, rebuilding is happening slowly and lot of promises remained just promises. The judiciary bench is often accused by the right wing (current government) to have the majority of judges being close to the left wing and to try to overcome the government.
So, depending on the political orientation, people think either that prosecutors are just doing their jobs, or that they are trying to put pressure on the government accusing the civil protection. You may feel a bit puzzled at this point asking yourself what's the problem if, after all, they are simply following the law that obliges them to investigate. A common argument by right wing people is that there are simply too many notifications of crimes and accusations to investigate on all of them and the judiciary bench selects them (or better give priorities) based on a political agenda.
So, don't think this is only a matter that has to do with science. It has more to do with the judiciary system and politics.
Now people can feel free to think everyone here is an idiot :)