The example that I always like to use is the Big Bang, which was first formulated by Monsignor Georges Lemaitre, a Belgian priest. At the time that it was proposed, it received significant disdain from the astronomical community, since most astronomers at that time believed that the Universe was eternal and static (the so-called "steady state") -- they felt that a beginning of space and time at some point in the finite past crossed over into the realm of religion and philosophy. On the other hand, the religious community (by and large) welcomed the Big Bang with open arms, since it was in accordance with the creation accounts of their particular belief systems.
But in the 80 years or so since the advent of the Big Bang theory, a funny (and depending on your point of view, sad) thing has happened: The two camps have almost completely switched sides. As the evidence came in, most astronomers and cosmologists came to accept the Big Bang. They saw the confirmation of Hubble's observations regarding the redshift of distant galaxies, the discovery of the CMBR, the evidence that the distribution of baryonic matter in the Universe is consistent with what is predicted by Big Bang nucleosynthesis, etc.
Unfortunately, for those segments of the religious community that have been hijacked by the rise of fundamentalism / fanaticism in the last 50 years or so, the Big Bang was no longer "good enough". The idea that the Universe came about in a dramatic cataclysm ("in the beginning...") became unacceptable since the timescale called for billions of years, rather than the six thousand or so that are dictated by a rigid literalist interpretation of the appropriate holy writ. It's not good enough that the prevailing scientific theory on the origin of the Universe calls for a beginning -- it's not fundamentalist enough.
The idea that science and religion are incompatible is poisonous and civilization-threatening. Getting back to the example, the idea that religious folks, of all people, should be opposed to the Big Bang theory is completely baffling. If I live to be a thousand years old, I'll never understand it. There's no shortage of beauty in modern science or ancient teachings; the conflicts (such as they are) are largely manufactured. And as you mention, the rising fundamentalist movement is a major player in this enterprise.