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Description

NAMD is a high-performance parallel molecular dynamics software specifically developed for the simulation of extensive biomolecular systems. Utilizing Charm++ parallel objects, it effectively scales from personal computing devices to advanced parallel systems, accommodating hundreds of cores for standard simulations and exceeding 500,000 cores for the most demanding cases. This software is tailored for researchers aiming to perform efficient simulations of large molecular systems while ensuring integration with commonly utilized molecular modeling workflows. It collaborates with the well-known molecular graphics tool VMD for both simulation setup and trajectory analysis, maintaining compatibility with file formats from AMBER, CHARMM, and X-PLOR. Furthermore, it is engineered to facilitate biomolecular simulations that encompass proteins, membranes, nucleic acids, solvents, ions, and other molecular systems, allowing for an in-depth exploration of atomic interactions and time-dependent movements. Researchers can therefore rely on NAMD to provide comprehensive insights into complex molecular dynamics.

Description

Yade is a versatile and open-source framework aimed at discrete numerical modeling, particularly utilizing the Discrete Element Method. The core computational components are developed in C++, leveraging a flexible object model that facilitates the standalone implementation of new algorithms and interfaces. Meanwhile, Python serves as the language for quick and efficient construction of scenes, control of simulations, postprocessing tasks, and debugging processes. This framework is particularly suited for researchers and engineers who require the ability to create, execute, analyze, adjust, and expand particle-based simulations through scripts, interactive commands, graphical interfaces, and reusable simulation elements. Users can construct simulations using specialized generators or directly through Python scripts, offering considerable freedom in developing custom models, importing geometries, reusing code, and managing the entire simulation loop. Each simulation is represented as a scene that encompasses bodies, interactions, and the forces resulting from them, with the bodies characterized by their geometry, material properties, and state variables. Additionally, Yade's architecture promotes collaboration and sharing of advancements within the research community, enabling continuous improvement of simulation techniques.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

C++
Python

Integrations

C++
Python

Pricing Details

Free
Free Trial
Free Version

Pricing Details

Free
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Theoretical and Computational Biophysics Group

Founded

2006

Country

United States

Website

www.ks.uiuc.edu/Research//namd/

Vendor Details

Company Name

Yade

Founded

2009

Country

Czech Republic

Website

yade-dem.org/doc/

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