Average Ratings 0 Ratings
Average Ratings 0 Ratings
Description
NAMD is a high-performance parallel molecular dynamics software specifically developed for the simulation of extensive biomolecular systems. Utilizing Charm++ parallel objects, it effectively scales from personal computing devices to advanced parallel systems, accommodating hundreds of cores for standard simulations and exceeding 500,000 cores for the most demanding cases. This software is tailored for researchers aiming to perform efficient simulations of large molecular systems while ensuring integration with commonly utilized molecular modeling workflows. It collaborates with the well-known molecular graphics tool VMD for both simulation setup and trajectory analysis, maintaining compatibility with file formats from AMBER, CHARMM, and X-PLOR. Furthermore, it is engineered to facilitate biomolecular simulations that encompass proteins, membranes, nucleic acids, solvents, ions, and other molecular systems, allowing for an in-depth exploration of atomic interactions and time-dependent movements. Researchers can therefore rely on NAMD to provide comprehensive insights into complex molecular dynamics.
Description
Yade is a versatile and open-source framework aimed at discrete numerical modeling, particularly utilizing the Discrete Element Method. The core computational components are developed in C++, leveraging a flexible object model that facilitates the standalone implementation of new algorithms and interfaces. Meanwhile, Python serves as the language for quick and efficient construction of scenes, control of simulations, postprocessing tasks, and debugging processes. This framework is particularly suited for researchers and engineers who require the ability to create, execute, analyze, adjust, and expand particle-based simulations through scripts, interactive commands, graphical interfaces, and reusable simulation elements. Users can construct simulations using specialized generators or directly through Python scripts, offering considerable freedom in developing custom models, importing geometries, reusing code, and managing the entire simulation loop. Each simulation is represented as a scene that encompasses bodies, interactions, and the forces resulting from them, with the bodies characterized by their geometry, material properties, and state variables. Additionally, Yade's architecture promotes collaboration and sharing of advancements within the research community, enabling continuous improvement of simulation techniques.
API Access
Has API
No
API Access
Has API
No
Integrations
C++
No
Python
No
Pricing Details
Free
Free Trial
No
Free Version
Yes
Pricing Details
Free
Free Trial
No
Free Version
Yes
Deployment
Web-Based
No
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
Yes
Chromebook
No
Deployment
Web-Based
No
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
No
Mac
No
Linux
Yes
Chromebook
No
Customer Support
Business Hours
No
Live Rep (24/7)
No
Online Support
Yes
Customer Support
Business Hours
No
Live Rep (24/7)
No
Online Support
Yes
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
No
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
No
Vendor Details
Company Name
Theoretical and Computational Biophysics Group
Founded
2006
Country
United States
Website
www.ks.uiuc.edu/Research//namd/
Vendor Details
Company Name
Yade
Founded
2009
Country
Czech Republic
Website
yade-dem.org/doc/