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ease
features
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support

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Description

Cufflinks is a software tool that compiles transcripts, estimates their levels of abundance, and evaluates differential expression and regulation in RNA-Seq datasets. By accepting aligned RNA-Seq reads, it organizes these alignments into a streamlined representation of transcripts. The software then assesses the relative abundances of these transcripts based on the number of supporting reads, while also factoring in potential biases from library preparation methods. Initially created through a collaboration with the Laboratory for Mathematical and Computational Biology, Cufflinks aims to simplify the installation process by offering several binary packages that alleviate the often cumbersome task of building the software from source, which necessitates the installation of various libraries. This toolset encompasses multiple utilities tailored for analyzing RNA-Seq experiments, with some functionalities available independently and others designed to fit into a more comprehensive workflow. Overall, Cufflinks serves as a vital resource for researchers in the field of genomics, enhancing their ability to interpret RNA-Seq data effectively.

Description

Partek bioinformatics software offers robust statistical and visualization capabilities through a user-friendly interface that caters to researchers of varying expertise. This innovation allows users to navigate genomic data with unprecedented speed and ease, truly embodying our motto, "We turn data into discovery®." With pre-installed workflows and pipelines in a simple point-and-click format, even complex NGS and array analyses become accessible to all scientists. Our combination of custom and public statistical algorithms works seamlessly to transform NGS data into valuable biological insights. Engaging visual tools like genome browsers, Venn diagrams, and heat maps illuminate the intricacies of next-generation sequencing and array data with vibrant clarity. Additionally, our team of Ph.D. scientists is always available to provide support for NGS analyses whenever queries arise. Tailored to meet the demanding computational requirements of next-generation sequencing, the software also offers flexible options for installation and user management, ensuring a comprehensive solution for research needs. As a result, users can focus more on their research and less on technical challenges.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

No details available.

Integrations

No details available.

Pricing Details

Free
Free Trial
Free Version

Pricing Details

No price information available.
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Cole Trapnell

Founded

2017

Country

United States

Website

cole-trapnell-lab.github.io/cufflinks/

Vendor Details

Company Name

Partek

Founded

2011

Country

United States

Website

www.partek.com

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