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Description
Cufflinks is a software tool that compiles transcripts, estimates their levels of abundance, and evaluates differential expression and regulation in RNA-Seq datasets. By accepting aligned RNA-Seq reads, it organizes these alignments into a streamlined representation of transcripts. The software then assesses the relative abundances of these transcripts based on the number of supporting reads, while also factoring in potential biases from library preparation methods. Initially created through a collaboration with the Laboratory for Mathematical and Computational Biology, Cufflinks aims to simplify the installation process by offering several binary packages that alleviate the often cumbersome task of building the software from source, which necessitates the installation of various libraries. This toolset encompasses multiple utilities tailored for analyzing RNA-Seq experiments, with some functionalities available independently and others designed to fit into a more comprehensive workflow. Overall, Cufflinks serves as a vital resource for researchers in the field of genomics, enhancing their ability to interpret RNA-Seq data effectively.
Description
OmnibusX is a no-code multi-omics data analysis platform designed for academic labs and pharmaceutical R&D teams. It enables researchers to transform raw biological data into publication-ready insights through a unified and intuitive interface. The platform supports a wide range of data types, including scRNA-seq, scATAC-seq, bulk RNA-seq, spatial transcriptomics, and metagenomics. OmnibusX eliminates the need for complex coding and multiple tools by centralizing workflows and datasets in one place. It offers tailored analysis pipelines and interactive visualizations such as UMAP and t-SNE for deeper data exploration. Users can generate high-quality, customizable figures suitable for journal submissions directly within the platform. By simplifying complex bioinformatics processes, OmnibusX accelerates research and discovery for scientists worldwide.
API Access
Has API
API Access
Has API
Integrations
Amazon S3
Python
Pricing Details
Free
Free Trial
Free Version
Pricing Details
$45/month/user
Free Trial
Free Version
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Vendor Details
Company Name
Cole Trapnell
Founded
2017
Country
United States
Website
cole-trapnell-lab.github.io/cufflinks/
Vendor Details
Company Name
OmnibusX Company Limited
Founded
2024
Country
Vietnam
Website
omnibusx.com