Best Bookkeeping Software for Shopify

Find and compare the best Bookkeeping software for Shopify in 2025

Use the comparison tool below to compare the top Bookkeeping software for Shopify on the market. You can filter results by user reviews, pricing, features, platform, region, support options, integrations, and more.

  • 1
    Xero Reviews
    Top Pick

    Xero

    Xero

    $2.90/month
    4,660 Ratings
    See Software
    Learn More
    Xero is an online accounting solution designed specifically for bookkeepers. This platform allows you to streamline your administrative and compliance responsibilities, giving you more opportunity to focus on client support, promote your bookkeeping services, and expand your business. Furthermore, Xero integrates its practice management tools and data effectively, providing a cohesive solution for managing your accounting practice.
  • 2
    QuickBooks Online Reviews
    Top Pick

    QuickBooks Online

    Intuit

    $9/month (normally $15/month)
    45 Ratings
    QuickBooks Online is the most widely used accounting software in the entire world. QuickBooks Online simplifies accounting. Accounting software for small businesses that is #1 makes it easy to track receipts, income, transactions and more. You can take photos of receipts to link them with expenses. Our agents are available to answer any questions you may have about QuickBooks. Keep your business running smoothly by using the apps that you love. QuickBooks Online is compatible with PCs, Macs, tablets and phones. Click the link to get a 30-day free trial, and 50% off for your first three months. QuickBooks is more than just accounting software. QuickBooks helps you keep track of your income and expenses so that you can prepare for taxes. Customers save an average of $3,534 per year. Need more help? QuickBooks Live helps you to stay organized and ready for tax season. QuickBooks Mobile is a mobile application that helps you run your business anywhere, anytime.
  • 3
    HoneyBook Reviews
    Top Pick

    HoneyBook

    HoneyBook

    $19 monthly ($16 annually)
    16 Ratings
    HoneyBook makes it easy for independent business owners to communicate with customers and clients, manage projects, and get paid—all in one place. With the help from our business management software, you can automate your busy work and stay on top of all your to-dos, saving time and money so you can grow your business. Its like your own personal assistant. With their proposals, invoices, contracts, payments, and scheduling at your fingertips, HoneyBook gives you everything you need to give clients an unforgettable experience.
  • 4
    Link My Books Reviews

    Link My Books

    Link My Books

    $17 per month
    1 Rating
    Let Link My Books handle the complex task of accurately tracking your Amazon sales, associated fees, VAT, and taxes, freeing up valuable hours each month that would otherwise be spent on bookkeeping. Many Amazon sellers struggle with properly managing their sales accounts, but Link My Books simplifies this process significantly. We organize your transactions from each Amazon payout into clear and manageable categories, and we even offer a default set of accounts to help you get going right away. If you prefer, you can also select from your own established accounts within Xero or QuickBooks. Don't just take our word for it; many users have reported impressive results from utilizing our integration with Xero for their Amazon finances. By integrating directly with Amazon Seller Central and either Xero or QuickBooks, Link My Books automates the often tedious accounting tasks related to your Amazon business, ensuring a seamless experience for sellers. This innovative solution empowers you to focus more on growing your business instead of getting bogged down by financial details.
  • 5
    Uplinq Reviews
    Uplinq harnesses advanced machine learning and a skilled team to ensure your bookkeeping is always current while converting your data into valuable financial insights with just a single click. The traditional methods of managing bookkeeping, taxes, and finances often lead to wasted time and resources, which is where Uplinq comes in. Our approach transcends basic bookkeeping by delivering financial intelligence specifically tailored to your business needs, updated weekly for optimal relevance. With our data-centric technology, you can effortlessly link to the various institutions and tools essential for running your operations. Shouldn’t managing finances be this straightforward? Our system monitors your business activities and automatically sorts your transactions, enabling us to furnish you with weekly financial analytics without the usual barrage of inquiries. Many entrepreneurs find it challenging to leverage their financial data effectively, but Uplinq directly addresses this issue. You will gain a comprehensive overview of your business, refreshed in near real-time, ensuring that you are always informed and ready to make strategic decisions. By simplifying financial management, Uplinq empowers you to focus on growing your business.
  • 6
    LessAccounting Reviews

    LessAccounting

    LessAccounting

    $24 per month
    We help businesses get paid faster and make accounting easier. Stop Doing Redundant Tasks Our state-of-the-art technology powered by machine learning allows you to quickly calculate years worth of expenses in just an hour. Make professional invoices Pay quickly from your invoice We created invoices that allow you to get paid directly via Stripe, PayPal or Square. In the event that your client forgets to pay, they will be automatically re-assured and you will be notified once payment has been made. Your invoice will be updated with the matched payments. Get ready for tax filing! Are you ready to visit your accountant? In just two clicks, your Balance Sheet is ready. You can also share any reports or your entire account with your accountant in a matter of seconds. Now you are collaborating. It was simple.
  • 7
    Bookkeeper360 Reviews

    Bookkeeper360

    Bookkeeper360

    $19 per month
    Customized accounting, technology, and advisory solutions designed specifically for you can greatly reduce the frustrations and unexpected financial issues that arise from disorganized records and inaccurate bookkeeping. We are committed to delivering precise and timely financial insights that reflect the state of your business. Remember, your passion lies in building your business, not managing an accounting team. Our dedicated group of CPAs, advisors, and tech specialists are fully equipped to support your success with the right resources. Our entirely US-based workforce employs innovative technology to handle your accounting needs while maintaining a personal connection. Bookkeeper360 is a trusted partner for thousands of small businesses across the country and has earned accolades as a two-time recipient of Xero’s Top Partner of the Year award, in addition to being named one of Inc. 5000’s Fastest-Growing Companies for the last three consecutive years. Recognized as an industry leader, Bookkeeper360 has also been featured in prestigious publications such as Forbes, Accounting Today, Business Insider, and CPA Practice Advisor, showcasing our commitment to excellence and innovation. Our mission is to provide you with peace of mind, allowing you to focus on the growth of your business while we take care of the numbers.
  • 8
    Quipu Reviews

    Quipu

    Quipu

    €12 per month
    For over eight years, Quipu has simplified accounting for small businesses and freelancers by making it automated, efficient, and entirely paperless. By accessing the Overview section, you can view an updated financial summary of your business, including synchronized bank accounts and a thorough analysis of your income and expenses. Our platform allows you to create customizable invoices and estimates with ease, utilizing templates and saving time with the auto-complete feature. Instantly digitize your income and expenses through our OCR system—simply upload an image from your mobile device, add a file to Quipu, or send it via email. Say goodbye to the hassle of manually filling out tax forms, as Quipu automatically handles this process for you, ensuring accuracy every time. You can synchronize your bank accounts to see everything in one place, making it easy to reconcile transactions and invoices with just a few clicks. Your sales cycle will always be well-managed and organized, allowing you to quickly assess the status of your documents and handle them with ease. With Quipu, you can focus more on growing your business while we take care of the details.
  • 9
    QuickBooks Online Advanced Reviews
    Equip your business with essential tools to enhance efficiency and gain valuable insights for growth, all available through QuickBooks Online Advanced. Access the critical data you require with reports that are not only customizable but also ready for presentation, while ensuring that your spreadsheets are synchronized for precise business information and tailored insights. Reduce the burden of manual tasks by effortlessly importing and dispatching numerous invoices and expenses simultaneously, and streamline the process of entering and modifying multiple bills and checks within a few simple steps. We prioritize your security by safeguarding your financial details with advanced encryption and robust protective measures. Personalize your workflow by selecting from a range of seamless app integrations specifically designed for QuickBooks Online Advanced, and enhance its capabilities by connecting with top-tier applications like DocuSign, Bill.com, HubSpot, and Salesforce, among others. With these features, you can significantly improve your business operations and drive success more effectively.
  • 10
    MYOB Reviews

    MYOB

    MYOB

    $11/month
    MYOB Business is a robust cloud-driven software solution aimed at enhancing the financial and operational efficiency of small to medium-sized enterprises (SMEs). This platform encompasses an array of functionalities, such as invoicing, expense tracking, payroll management, inventory oversight, and compliance with tax regulations. Through its real-time financial reporting and intuitive dashboards, MYOB Business equips business owners with critical insights necessary for making well-informed choices. The software also facilitates smooth integrations with various banking systems, payment processors, and additional business applications, promoting automation and minimizing manual workloads. Renowned for its adaptability, MYOB Business is designed to support the evolving needs of expanding businesses by offering versatile pricing structures and customizable options tailored to different sectors. Moreover, its user-friendly interface ensures that even those with limited accounting experience can navigate the software with ease.
  • 11
    Dext Commerce Reviews

    Dext Commerce

    Dext

    $59 per month
    Automatedly retrieve sales data for your clients from multiple ecommerce and point-of sale platforms. Split transactions, fees and reimbursements line by line. All in one subscription. Dext Commerce gives clients a standard view of sales data from multiple platforms. This is ideal for clients who sell on Amazon, eBay Etsy, Etsy, Shopify, and Amazon. You can assign tax to an order at the appropriate domestic or international rate. Additionally, you have a clear view of individual transactions across platforms and regions. Your Dext Commerce subscription includes all digital sales integrations, so you can easily meet the needs of each client, from side hustles to multiplatform e-commerce sellers.
  • 12
    Fincent Reviews
    Introducing Fincent, the unparalleled solution that seamlessly integrates stunning software, skilled human bookkeepers, and dedicated customer support. Now, you can expand your business, manage expenses efficiently, and still carve out time for personal pursuits. Enjoy consistent, accurate, and validated financial records delivered by the 15th of each month. Choose between the standard accrual-basis method or opt for a cash basis to suit your preferences. Effortlessly create digital invoices, solicit payments, and send reminders to clients about outstanding bills. You have the flexibility to absorb transaction fees yourself or pass them on to your customers in their invoices. Allow your clients the convenience of paying through ACH, credit, or debit options. Benefit from continuous support for filing both your business and personal taxes throughout the year. Entrust the entire tax filing process for your S-Corp, LLC, or any business structure to professionals who will prepare, scrutinize, and validate your forms before you sign off on them. With Fincent's advanced search functionality, you can quickly locate invoices, transactions, and subscriptions with ease, ensuring you stay organized and efficient. In essence, Fincent provides not just a service, but a comprehensive solution that empowers your business and simplifies your financial management.
  • Previous
  • You're on page 1
  • Next