Comment Military operated, but was a civilian trip (Score 4, Informative) 95
This was a military operated flight, but only brought civilians (two well-known TV presenters, persons from the National Culture Council, camera men, producers, and people related with the TV network, a businessman and philanthropist which had a ONG regarding the reconstruction, and personnel of said ONG) to record the show, so to answer your question, no, probably there were no problems regarding the tracking of military operations.
So far the weather conditions plus the fact that the plane crashed at sea has caused that only few bodies have been found (4 confirmed out of 21), so the signal from the iPhone was an important lead to the victims' bodies whereabouts. It certainly beats the clairvoyants they are also using (seriously).