Alternatives to Swiss-PdbViewer

Avogadro, an advanced molecule editor/visualizer, is designed for cross-platform usage in computational chemistry and molecular modeling. It provides high-quality rendering and a powerful plugin structure. Avogadro, a free and open-source molecular editor/visualization tool, is available for Mac, Windows, and Linux. It can be used in computational chemistry and molecular modeling as well as materials science and other related areas. It provides flexible, high-quality rendering and a powerful plugin structure.

HyperProtein, Hypercube, Inc.'s latest product, focuses on the computational science of protein sequences. The product allows you to analyze one-dimensional sequences of protein as well as subsequent three-dimensional structures. The product's most important feature is the relationship between structure and sequence. HyperProtein is not like other software programs that can perform specific functions, such as sequence alignment or protein sequence sequence, but it does combine a variety of Bioinformatics tools and Molecular Modeling tools that are related to the science that begins with a protein sequence.

Ascalaph Designer is a general purpose program for molecular dynamics simulations. All the molecular dynamics methods can be implemented in a single graphical environment. Molecular geometry optimization using conjugate gradient methods. Displays molecular models in separate window. Two cameras are installed in each window. This allows the model to be viewed simultaneously from both sides and in different graphic modes. Drag the splitter located in the right corner to open the subwindow. Clicking on an atom/bond with the left mouse button changes their color. A brief description of the object is displayed in the status bar. Large molecules, especially proteins, can be drawn in wireframes. This style allows for fast drawing. CPK wire frame combines all the above properties.

StarDrop™, a comprehensive suite of integrated software, delivers the best in silico technology within a highly visual interface. StarDrop™, which allows seamless flow between the latest data, predictive modeling, and decision-making regarding the next round or synthesis, improves the speed, efficiency and productivity of the discovery process. A balance of different properties is essential for successful compounds. StarDrop™, which guides you through the multi-parameter optimization challenge, helps you target compounds with the highest chance of success. It also saves you time and resources by allowing you to synthesize fewer compounds and test them less often.

The biopharmaceutical market is complex today. There are growing demands for better specificity and safety, new treatment classes, and more complex mechanisms of disease. To keep up with this complexity, we need to have a better understanding of therapeutic behavior. Simulation and modeling provide unique opportunities to explore biological and physical processes down to the atomic levels. This can be used to guide physical experimentation and accelerate the discovery and development process. BIOVIA Discovery Studio brings together more than 30 years of peer reviewed research and world-class in-silico techniques like molecular mechanics and free energy calculations. It also allows for biotherapeutics developmentability and other related topics into one environment. It gives researchers a complete toolkit to explore the nuances in protein chemistry and to catalyze the discovery of small and big molecule therapeutics, from Target ID to Lead Optimizement.

PyMOL is a user-sponsored molecular visualization system on an open-source foundation. It is maintained and distributed by Schrodinger. The PyQt interface replaces MacPyMOL and Tcl/Tk on all platforms. Support for custom scripting and third-party plugins is better. Comprehensive software package for animating and rendering 3D structures. A plug-in to embed 3D animations and images into PowerPoint presentations. PyMOL is a commercial product. However, most of the source code is freely available under a permissive licence. Schrodinger maintains the open-source project and all PyMOL license holders pay for its funding. Open access incentive executables. Liberal evaluation policy. Improved fuse command (disallows Hypervalent bonds, substitutes monovalent Atoms instead of attaching them to them). Properties inspector now supports unsetting settings using the "delete key". Fix workspace disappearing at specific resolutions

YASARA, a molecular modeling, simulation, and modeling program for Windows, Linux and MacOS, was developed in 1993. It makes it easy to answer all your questions. YASARA offers a user-friendly interface, photorealistic graphics and support for affordable virtual realities headsets, shutter glasses and autostereoscopic displays. This allows you to concentrate on your goal and not the details of the program. YASARA is powered with PVL (Portable Vector Language), a brand new development framework that delivers superior performance to traditional software. PVL allows you visualize even the largest proteins. It also enables interactive real-time simulations using highly accurate force fields on standard computers, making use of GPUs when possible. Dynamic models allow you to push and pull molecules and can be used instead of static photos.

MolView is an intuitive and open-source web application that makes science and education more amazing. MolView is a web-based data visualization tool. MolView allows you to search different scientific databases such as compound databases, protein databases, and spectral databases. You can also view records from these databases in interactive visualizations using WebGL or HTML5 technologies. This web application is built using the JavaScript libraries and other online services. This project was inspired by the Virtual Model Kit.

ChemOffice improves scientists' productivity and helps them do better research by allowing them to organize and explore chemical reactions and their properties. This allows them to turn data into actionable information and make more confident decisions. ChemDraw Excel adds chemical intelligence to Excel spreadsheets. Chemists can use Excel's sorting, organization and analysis tools to further manipulate and enrich sets and data as well as explore structure-activity relationships. Chem3D creates 3D models that allow chemists to view their compounds in three dimensions. This allows them to evaluate shape and properties to maximize specificity or activity. ChemFinder is a chemically-intelligent personal database system that scientists use to organize their compounds and to search for and correlate structures with properties.

ChemDoodle 2D has thousands of chemistry features that will help you create the best graphics possible and save you hours of work. ChemDoodle 2D graphics are carefully reviewed by us. The software automatically places attributes in the best places, orients bonds in the right directions, merges bonds strokes together, and makes smart decisions that result in beautiful and appealing images. You can always modify the software to your liking. Each component of the graphic can be customized to your liking. You can control the shape transparency and color, as well as bond widths and arrowhead sizes. ChemDoodle's drawing controls allow you to clearly model the atoms, bonds and arrowheads they manage. You are provided with ample visual feedback. You can also customize the drawing tools to suit your preferences, including accessibility considerations.

OmicsBox, a leading bioinformatics tool, offers end-toend data analysis for genomes, transcriptomes and metagenomes. It also provides genetic variation studies. The application, which is used by leading private and public research institutes worldwide, allows researchers to process large and complicated data sets and streamline their analytical process. It is designed to be efficient, user-friendly and equipped with powerful tools to extract biological insight from omics data. The software is divided into modules, each of which has a set of tools and features designed to perform specific types of analyses, such as de novo genome assemblies, genetic variations analysis, differential expression analyses, taxonomic classifications, and taxonomic classes of microbiome, including the interpretation of results and rich visualizations. The functional analysis module uses the popular Blast2GO annotating methodology, making OmicsBox a great tool for non-model organisms research.

Eidogen-Sertanty’s Target Informatics platform (TIP), is the first global structural informatics system. It enables researchers to examine the druggable genome from an structural perspective. TIP increases the rapidly expanding body experimental protein structure information and transforms structure based drug discovery from an inefficient, data-scarce discipline to a high-throughput science with rich data. TIP is a tool that bridges the knowledge gap between bioinformatics (bioinformatics) and cheminformatics. It provides drug discovery researchers with a knowledge bank of information that is both unique and highly complementary to existing bio- and cheminformatics platform information. TIP's seamless integration between structural data management technology and unique target-to-lead analysis capabilities enhances every stage of the discovery pipeline.

MoluCAD is a fully-featured molecular modelling and visualization tool for Windows. It is the product of a three-year National Institutes of Health research project in biomedical technology that aimed to produce low-cost educational software for students of chemistry. This latest version includes many advanced features that are only available in expensive workstation-based modeling programs. MoluCAD's trademarks are ease-of-use, high-quality graphics, and computational reliability. Users can quickly create models, view them from any perspective, create reaction animations and save all data to disk.

Our web-based chemistry editor makes it easy to create and publish chemical structures. Marvin Pro is a drawing program that combines our chemically intelligent technology and a simple user interface. Researchers, students, and chemists can quickly convert their thoughts into high quality visual representations. Marvin Pro can handle a large number objects, chemical structures, arrows or texts on a single canvas and align them with precision. Chemical editors don't have to be difficult. Our intuitive solution will allow you to transform your chemical structure ideas into clear visuals. Your research should be reflected in the quality of your chemical drawings. Marvin Pro lets you create high-quality visuals you can present to your workplace. Marvin Pro can be your extension. You can add pre-defined labels or templates, color your structures, and insert photos from external sources. The structure's formula can be displayed.

A platform that connects scientific reasoning, compound design, computational resources, and other relevant information. The Design Hub by Chemaxon for medicinal chemistry, from analysis to prioritization. One platform to design compounds and manage ideas. One platform that links scientific rationale, compound design, computational resources, and other information. You can switch from PowerPoint files to graphical or chemically searchable hypotheses, which are integral parts of compound design. You can easily work in a rich visual environment with your trusted physchem properties, computational models or novelty issues. This secure online service allows you to involve your CROs in compound progression. Analyze the evidence from biological assays and experimental structural information to extract SAR and create new hypotheses for each optimization iteration. Your scientific hypotheses can be stored in a "designer’s ELN" (chemically-aware drawing canvases).

ArgusLab is a program that allows you to molecular model, graphically, and design drugs for Windows operating systems. Although it is becoming a little outdated, it remains very popular. There have been more than 20,000 downloads to date. ArgusLab can be downloaded for free. You don't have to sign anything. If you're teaching a class in which ArgusLab might be useful, you can print as many copies as necessary. You cannot redistribute ArgusLab to other websites or sources. You may link to this website on your own websites, however. ArgusLab is being port to the iPad in a low-key effort. I have also worked with Qt cross-platform development environment to support Mac, Linux, and PC.

Design and simulate cloning processes accurately. Test complex projects, catch mistakes before they happen, get the right constructs on the first try. Cloning becomes easier when you see what you're doing. The intuitive interface simplifies complex tasks by providing you with a clear view of your work. SnapGene automates the documentation so you don't need to. Share and view every sequence edit or cloning process that led to the final plasmid. Improve your core molecular biological procedures and your results. SnapGene Academy, our new online learning centre, will help you master SnapGene as well as key concepts in cloning. SnapGene Academy contains over 50 video tutorials, taught by experts in the field. This helps you improve your skills in multiple molecular biological courses. SnapGene 7.2 offers a new visualization for primer homodimer structure and enhancements to the file management. Tabs can be organized using drag-and-drop in multiple windows.

This free tool provides stunning visualizations of genomic data, giving you the power to see exactly what is happening at each base pair within your samples. GenomeBrowse is a desktop application that runs natively on your computer. You no longer have to compromise on speed or interface quality in order to achieve a consistent experience across platforms. It was designed with performance in mind, to provide a faster browsing experience than any genome browser currently available. GenomeBrowse has also been integrated into the powerful Golden Helix VarSeq annotation and interpretation platform. VarSeq is a powerful tool for filtering, analyzing, and annotating your data. If you enjoy the visualization experience provided by GenomeBrowse then try it out. GB can show all your alignment data. You can find context-relevant findings by looking at all your samples together.

MEGA (Molecular Evolutionary Genetics Analysis), a powerful, user-friendly software package designed to analyze DNA and protein sequences from species and populations. It allows for both manual and automatic sequence alignment, phylogenetic trees inference, and evolutionary hypotheses testing. MEGA is a powerful tool for comparative analysis of sequences and understanding molecular evolutionary processes. It supports a wide range of statistical methods, including maximum likelihood, Bayesian Inference, and ordinary least-squares. MEGA has advanced features like real-time captions to explain the results of the analysis and the methods used. It also uses the maximum composite likelihood method to estimate evolutionary distances. The software comes with powerful visual tools such as the alignment/trace editors and tree explorers, and supports multi-threading to ensure efficient processing. MEGA is compatible with Windows, Linux and macOS.

Stop messing around with broken informatics tools and cloud infrastructure. Get started today on uncovering biological insights. Scientists are often limited by the fragmentation of tools across biology and bioinformatics teams. To help teams accelerate their R&D, we created a harmonized platform for bioinformatics between the cloud and the wet lab. Import raw data from your cloud service provider, your team's instruments, or your cloud. Create and deploy custom bioinformatics workflows using any language. Stop wasting time tinkering with your infrastructure. You can easily run any workflow and keep track of every analysis. Interactive visualizations of NGS data ready-to-go with point-and click plots Latch integrates with your AWS S3. You can access hundreds of terabytes in organic filesystems you are familiar with. Create bioinformatics workflows, and dynamically create no-code interfaces with Python with tunable storage and compute.

VSClinical allows the clinical interpretation based on ACMG & AMP Guidelines. The VSClinical workflow is guided by the American College of Medical Genetics guidelines for identifying and classifying causal variants in inherited disease risk, predisposition to cancer, and diagnosis of rare diseases. The ACMG/AMP Joint Guidelines for Variant Interpretation provide a set criteria to score variants, and place them in one of five classification tiers. The guidelines require a deep dive into the annotations and genomic context of each variant, as well as existing clinical assertions. VSClinical offers a customized workflow to score each relevant criteria, while also providing bioinformatics, literature and evidence gathered from clinical knowledgebases. VSClinical was designed to help variant scientists process variants efficiently.

Partek bioinformatics software provides powerful visualization and statistical tools in an intuitive interface. Researchers of all levels can explore genomic data faster and more efficiently than ever before. We turn data into discovery®. Our intuitive interface makes it easy for scientists to perform sophisticated array and NGS analysis using pre-installed workflows. Public and custom statistical algorithms can be used together to quickly and accurately distill NGS data into biological insights. Genome browser, Venn diagrams and heat maps, as well as other interactive visualizations, show the biology of your next generation sequencing and array data in vivid color. Our Ph.D. scientists can be reached at any time to assist with your NGS analysis. This product is specifically designed for next-generation sequencing applications that require high-level computing. It offers flexible installation and management options.

Geneyx Analysis provides a comprehensive solution to analyze next-generation sequencing data. It can be used by commercial and hospital labs. This advanced platform integrates AI and machine learning features to identify new biomedical insights while improving diagnostic yields. Geneyx Analysis provides a transparent and intuitive solution that allows clinicians and researchers complete control over their data analysis. This reduces the complexity of regulating internal bioinformatics workflows. Our comprehensive annotation engine can support the analysis of all genetic variations, including structural and copy-number variations, as well as regulatory components. Protocols can also be fully customized for gene panels, genomes, or exomes. Geneyx Analysis automates diagnostics from sequencer to report while creating a comprehensive resource of novel variants.

A robust platform for automatic variant prioritization and clinical interpretation, as well as report generation, is essential to ensure efficient reporting of NGS-based clinical trials. Strand Omics, a cloud-based platform that is HIPAA-compliant and fast, drives our clinical diagnostics practice. It has been refined over 4 years with over 10,000 clinical reports and multiple peer reviewed publications. Strand Omics is a combination of bioinformatics algorithms and curated databases, visualization interfaces, and reporting capabilities. It offers specialized workflows that can be used for rare inherited disorders and somatic tumor profiling tests. The platform has over 10,000 variants curated to oncogenicity, 100 genes that are curated for druggability across multiple types of cancer, and 500 drugs that have been curated for evidence.

The L7 Enterprise Science Platform (L7|ESP®) is a comprehensive platform designed to contextualize data and remove business silos through process orchestration. This all-in-one solution supports the digitalization of data and scientific processes within life sciences organizations. It includes native applications like L7 LIMS, L7 Notebooks, L7 MES, and L7 Scheduling. L7|ESP seamlessly integrates with third-party applications, lab instruments, and devices to consolidate all data into a unified model. Featuring a low-code/no-code workflow designer and numerous pre-built connectors, it ensures rapid implementation and full automation. Utilizing a single data model, L7|ESP enhances advanced bioinformatics, AI, and ML to provide new scientific and operational insights. L7|ESP addresses the data and lab management needs and challenges within the life sciences sector, specifically targeting: ● Research and Diagnostics ● Pharma and CDMO ● Clinical Sample Management Explore the L7 Resource Center for on-demand recordings, case studies, datasheets, and more: l7informatics dot com/resource-center

Geneious Prime makes bioinformatics more accessible by transforming raw information into visualizations which make sequence analysis intuitive. Simple assembly of sequences and easy editing contigs. Automatic annotation of gene prediction, motifs and translation. Genotype microsatellite trace with automated ladder fitting, peak calling, and generation of tables of alleles. A highly customizable sequence view displays beautiful visualizations of annotated assemblies and genomes. SNP variants analysis with powerful SNPs, RNA-Seq analysis and amplicon metagenomics. Create your own searchable database of primers for PCR and sequencing and design and test them. Geneious Biologics offers a flexible, scalable and secure way to streamline antibody analysis workflows. It allows you to create high-quality libraries, and select the best therapeutic candidates.

Our global data-sharing networks generate clinically actionable insights to improve patient outcomes globally. SOPHiA GENETICS is on a mission to build the future in AI-assisted medical care. We are integrating multimodal data from healthcare-omics, unlocking existing data silos and developing machine learning models in order to produce actionable insight that can eventually support healthcare professionals improve patient outcomes. The new interface, features, and cutting edge capabilities will accelerate precision medicine workflows and bring us closer to democratizing the data-driven medicine.

Galaxy is a web-based, open-source platform for data-intensive biomedical studies. Start here if you are a new Galaxy user or consult our support resources. Install Galaxy yourself by following the tutorial. You can choose from thousands of tools in the tool shed. This instance of Galaxy uses infrastructure generously provided to it by the Texas Advanced Computing Center. Additional resources are available primarily via the Jetstream2 cloud, via ACCESS and with support from National Science Foundation. Quantify, visualize and summarize mismatches from deep sequencing data. Build maximum-likelihood trees. Phylogenomic/evolutionary tree construction from multiple sequences. Using TN-93, combine matching reads to form clusters. Remove sequences that are within a certain distance of a cluster from a reference. Estimate gene essentiality scores using maximum-likelihood.

Comprehensive molecular structure drawing. Draw chemical structures and communicate your science.

Loupe Browser is an intuitive visualization software that allows you to explore and analyze 10x Genomics Chromium or Visium data. LoupeR can convert Seurat objects to Loupe Browser files. The Loupe Browser interface's navigation and interactive features are based on a dataset of lung squamous-cell carcinoma. The workspace is centered on the view panel, where single points representing barcodes of cells are shown in different projections. Each point represents a barcode. The vast majority of them correspond to a cell. The default projection, created by the Cell Ranger pipeline, is the tSNE plot. Other projections are also available. You can move the plot by dragging the mouse over cells. Zoom in and out using the mouse wheel or trackpad. Cluster labels will appear as you move the mouse over the plot. This is useful for data with a large number of precomputed groups.

MolPad integrates a interactive chemistry sketcher in any online learning platform. Open questions about molecular structure, organic chemistry, and other topics can be created that go beyond recognizing the correct answer. MolPad is a low-code environment that allows for dynamic content creation and smart assessment. It can enrich online chemistry education. We have created several solutions to enable students to practice chemical naming, functional group, and Lewis structures in a digital setting. Smart feedback that is based on specific errors can give students more insight than multiple choice questions.

Expert algorithms can help you to understand complex structures using experimental data.

BIOVIA solutions provide a unique scientific management environment that enables science-based organizations to create and connect biological and chemical innovations that will improve our lives. The BIOVIA portfolio, which is a leader in the industry, focuses on integrating science, experimental processes, and information requirements from all aspects of research, development, quality control, and manufacturing. Capabilities in the areas of Scientific Informatics and Molecular Modeling/Simulation Data Science, Laboratory Informatics Formulation Design, BioPharma Quality & Compliance, Manufacturing Analytics, and Laboratory Informatics. BIOVIA is committed in accelerating innovation, improving productivity, quality and compliance, reducing cost, and accelerating product development for customers across multiple industries. Connect scientific innovation processes and information throughout the product lifecycle.

Advanced molecular modeling can transform drug discovery and materials research. Our physics-based computational platform combines differentiated solutions for predictive modelling, data analytics, collaboration, and collaboration to allow rapid exploration of chemical space. Our platform is used by industry leaders around the world for drug discovery and materials science in fields such as aerospace, energy, semiconductors and electronics displays. The platform powers our drug discovery efforts, from target identification through hit discovery to lead optimization. It also powers our research collaborations to create novel medicines for critical public healthcare needs. Our team includes more than 150 Ph.D. scientists. This allows us to invest heavily in R&D.

BioNeMo, an AI-powered cloud service for drug discovery and framework, is built on NVIDIA NeMo Megatron. It is used to train and deploy large biomolecular Transformer AI models at supercomputing scale. The service provides pre-trained large language models (LLMs), native support for common file types for proteins, DNA, and chemistry, as well as data loaders for SMILES molecular structures and FASTA amino acid and nucleotide sequencings. You can also download the BioNeMo framework to run on your own infrastructure. ESM-1, which is based on Meta AI’s state-of the-art ESM-1b and ProtT5 respectively, are transformer-based protein-language models that can be used for learning embeddings for tasks such as property prediction and protein structure. BioNeMo will offer OpenFold, a deep-learning model for 3D structure prediction and novel protein sequences.

ChemDraw®, solutions have been able to provide powerful capabilities and integrations that allow you to quickly transform ideas and drawings into publications you are proud of. ChemOffice+ Cloud is a chemistry communication suite that transforms chemical drawings into chemical knowledge. It facilitates the management, reporting, and presentation of your Chemistry research. ChemOffice+ Cloud is a robust and comprehensive suite that was designed to simplify, facilitate, accelerate, and accelerate chemistry communication. The cloud-native ChemDraw Professional chemistry communication suite adds a powerful set to scientific research by adding a powerful set to the foundations. ChemOffice+ Cloud makes it much easier to create reports to communicate chemical research. Chemists can use ChemOffice+ cloud to create PowerPoint slides and manuscripts that are ready for presentation.

The QIAGEN CLC Geneomics Workbench is a powerful tool that works for all workflows. It is easy to overcome data analysis challenges with cutting-edge technology, unique features and algorithms that are widely used by scientists in industry and academia. Bioinformatics software solutions that are user-friendly allow for comprehensive analysis and interpretation of your NGS data. This includes de novo assembly and transcriptome assembly, resequencing analysis, WES and targeted panel support, variant calling, variant calling, RNA–seq, ChIP–seq and DNA methylation analysis (bisulfite sequence analysis). You can analyze your RNA-seq (miRNA, smallRNA) and smallRNA (lncRNA), data using easy-to-use transcriptomics workflows that allow for differential expression analysis at both gene and transcript levels. QIAGEN CLC Genomics Workbench was designed to support a wide variety of NGS bioinformatics programs.

g6gTech Inc. is a software company that develops deep search products in the fields of bioinformatics (AI) and artificial intelligence (AI). To emphasize our focus on creating products, we have changed our name from G6G Consulting Group. The new G6GFINDR System, powered by semantic annotation, searches an expanding database bioinformatics software and artificial intelligence software. It uses a two-step process to allow you to refine your search. The previously developed Directory of Omics, Intelligent Software was used as a starting point. We are expanding our database of searched products at a rapid pace. All products in the database were carefully selected. To optimize results, the G6GFINDR system uses cookies to automatically gather information about your activities. g6gTech Inc. created the G6GFINDR system.

GeoMx Digital Spatial Profiler allows you to quickly resolve tissue heterogeneity, and the complexity of the microenvironment with the most flexible and robust multi-omic spatial platform for analysis of FFPE tissue sections and fresh frozen tissue. GeoMx is a spatial biology platform which non-destructively profiles RNA and proteins from distinct tissue compartments, cell populations and an automated workflow that integrates standard histology staining. You can spatially profile the entire transcriptome and over 570 protein targets, either separately or simultaneously, using your choice of sample inputs. These include whole tissue sections (WTS), tissue microarrays or organoids. GeoMx DSP is the spatial biology platform you should choose for biomarker detection and hypothesis testing. Let the tissue guide you with a biology-driven profile that allows you to select the tissue microenvironments or cell types that are most important to you.

Qlucore Omics Explorer makes it so simple to use that you don't have to rely on a specialist in bioinformatics for analysis and exploration of your Omics or NGS data sets. Qlucore Omics Explorer, a next-generation D.I.Y bioinformatics software, is available for research in academia, life science, and plant-tech industries. The flexible and powerful visualization-based data analysis tool delivers instant results and allows for the exploration and visualization of large data. The software was designed to allow you to choose the best workflow for your experiments and maximize the results of your research. You will be able see your results instantly by combining instant visualization with powerful statistics, flexible selection methods, and powerful statistics. You decide the workflow and starting point for your own exploration. You have complete control over the exploration process and can tailor it to your needs.

Pluto was founded in 2021 by the Wyss Institute of Harvard University. It has been a trusted partner for many life sciences organizations across the country, from biotech start-ups and public biopharma companies. Our cloud-based platform allows scientists to manage all their data, run bioinformatics analysis, and create interactive visualizations that are published-quality. The platform is being used for a variety of biological applications. These include preclinical and translational science research, cell and gene therapies and drug discovery and development.

Founded in order to improve lives through high-value care, the hc1 platform has become a leader in bioinformatics for precision prescribing and testing. The cloud-based hc1 high-value care platform® organizes large amounts of live data, including genomics and medications, to provide solutions that ensure the right patient receives the right test and prescription. The hc1 Platform is a platform that powers solutions that optimize diagnostic testing, prescribing, and patient care for millions of patients across the country. Visit www.hc1.com to learn more about the proven approach of hc1 to personalizing care and eliminating waste for thousands upon thousands of health systems, diagnostic labs, and health plans.

Ruffus is a Python computation pipeline library. It is open-sourced and powerful, user-friendly, and widely used for science and bioinformatics. Ruffus was designed to automate scientific and other analyses with minimal fuss and effort. It is suitable for even the most basic tasks. Even complex pipelines can be handled. This will prevent make or scons from becoming cross-eyed and recursive. No "clever magic", no pre-processing. The lightweight syntax, which does one small thing well, is unambitious. Ruffus is licensed under the permissive MIT-free software license. This license allows for free use and inclusion in proprietary software. It is a good idea to run your pipeline in a temporary directory that is not connected to your original data. Ruffus is a lightweight Python module that can be used to build computational pipelines. Ruffus requires Python 2.6 and higher, or Python 3.0 and higher.

Universal Analysis Software (UAS), a platform that analyzes and manages forensic genomic data, simplifies complex bioinformatics. The UAS is an all-inclusive solution that includes analysis modules for all ForenSeq workflows, including ForenSeq MainstAY and ForenSeq Kintelligence. It also contains ForenSeq DNA Signature prep, ForenSeq DNA Whole Genome, ForenSeq Control Region, ForenSeq mtDNA Whole Genome and ForenSeq UAS Control Region. UAS quickly generates FASTQ files and performs alignment. It also calls forensically relevant variants using NGS data. The extensive testing behind UAS's variant calls ensures that they are reliable and deliver accurate results in a user-friendly package that does not require per-seat licenses. UAS is a tool for forensic analysts. It streamlines the handling of base-bybase sequence information. It also includes a variety of features that allow you to perform everything from a quick review of everyday STR profiles to detailed analysis on the most difficult samples.

The Bioconductor Project aims to develop open source software that allows for repeatable and precise analysis of biological data. We encourage a collaborative and inclusive community of data scientists and developers. Resources to maximize Bioconductor's potential. Our tutorials, guides, documentation, and guides cover everything from basic functionality to advanced features. Bioconductor is an open-source and open-development software that uses the R statistical language. It has an active user base and two releases per year. Bioconductor offers Docker images with every release, and supports Bioconductor in AnVIL. Bioconductor, founded in 2001, is an open-source project widely used in bioinformatics. Over 1,000 developers have contributed over 2,000 R packages, which are downloaded over 40 million times per year. Bioconductor is cited in over 60,000 scientific publications.

Data management and simplified Bioinformatics are ideal for labs that are just getting started or for those who want to scale up their next-generation sequencing operations quickly. BaseSpace Sequence hub is an integral part of the BaseSpace Suite and is a direct extension to your Illumina instruments. BaseSpace Sequence hub allows you to manage your data with ease using a set of curated analysis apps. BaseSpace Sequence hub is powered by Amazon Web Services. Provides a secure environment. You can set up runs and monitor the quality of instrument runs. By converting sequence data into a standard format, and streaming it directly to the cloud, this tool promotes efficiency. Access to computing resources is available without the need for capital expenditures. Access to a variety of genomic analysis apps, whether provided by you, Illumina or third parties, increases organizational productivity.

Improve team productivity and generate greater returns on research. Interactive data visualization allows you to share private and public data with other teams. Rosalind is a multi-tenant SaaS designed for scientists. Analyze, share, interpret, plan, validate and generate new hypotheses. Code-free visualization, AI-powered interpretation, best-in-class collaboration. ROSALIND is suitable for scientists of all levels, since it does not require any programming or bioinformatics knowledge. ROSALIND's powerful downstream analysis and collaborative capabilities make it a platform for discovery and data hub that connects experiment design, quality assurance, and pathway exploration. ROSALIND manages tens or thousands of cores of computing and petabytes in storage to dynamically scale each experiment up and down to deliver results. Share results instantly with other scientists around the world with audit tracking, so everyone can concentrate on interpretation and not the processing.

Store, archive, and manage multi-omic data sets. Illumina Connected Analytics provides a secure platform for genomic data to operationalize informatics, and drive scientific insight. CWL and Nextflow allow you to easily import, build and edit workflows. Leverage DRAGEN bioinformatics pipelines. Organize your data in a safe workspace and share it with the world in a compliant way. Our platform allows you to keep your data in the cloud. Visualize and interpret data using a flexible analysis tool, such as JupyterLab Notebooks. Data warehouses allow you to aggregate, query and analyze sample data and population data. Scale analysis operations through the creation, validation, automation, and deployment of informatics pipelines. Reduce the time needed to analyze genomic data when quick results are a key factor. Enable comprehensive profiling for the identification of novel drug targets and biomarkers of drug response. Data can be transferred seamlessly from Illumina sequencing platforms.

Legacy R&D software can be a drain on scientific potential. It slows down R&D progress and scatters data between silos. Benchling is the industry's most trusted life sciences R&D cloud. All the tools you need to accelerate, measure, and forecast R&D, from discovery through bioprocessing, all in one place. A suite of seven applications that are natively unified and can be used to accelerate R&D at all levels. Open integration, codeless configuration, and dashboards that are tailored to your needs. For continued success, deep life science R&D and consulting expertise are essential. Benchling is a unified R&D platform that allows you to spend less time searching for data and more time working together in order to advance your research. Scientists, managers, executives, and researchers can optimize R&D output by having complete visibility into the experimental context, program performance, resource utilization, and program performance.

We build products with our in-house chemists, biologists and clients to deliver outstanding performance and scientific understanding. Chemaxon offers a wide range of products, including out-of-the box solutions for scientists and IT professionals. It also includes components that add extra functionality as well as integrations with 3rd-party software, such Microsoft Excel or KNIME. Chemaxon, a leading software provider, is trusted by more than one million users. Its industry-leading tools for scientific discovery include calculation, search, and drawing tools. Our applications are used widely in education and research in the life sciences. Our clients come from a wide range of industries. The majority of major pharmaceutical companies are among them. Our offices are located at Budapest, Basel and Boston, with distributors all over the world.