Average Ratings 0 Ratings
Average Ratings 0 Ratings
Description
Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.
Description
Photo51 serves as an online molecular biology platform tailored for the design and examination of DNA and protein sequences. This comprehensive suite facilitates various tasks such as plasmid design, automated feature annotation, virtual cloning, PCR primer development, and simulating agarose gel electrophoresis. Users have the capability to import sequence files and utilize a built-in genome browser to navigate reference genomes, analyze gene views, and export sequences for their projects. Other features offered include the design of guide RNA with PAM visualization, pairwise and multiple sequence alignment, viewing of Sanger chromatograms, protein alignment, and reverse translation capabilities. Additionally, Photo51 fosters collaboration through shared team workspaces and maintains a version history for ongoing projects. The open-access genome browser enhances the exploration of genomic data, while subscription options unlock further editing and analytical functionalities. This platform is specifically designed for researchers, educators, and teams in biotechnology engaged in molecular biology tasks, promoting a streamlined workflow for various scientific inquiries. Overall, Photo51 stands out as a versatile tool that supports the diverse needs of the molecular biology community.
API Access
Has API
No
API Access
Has API
No
Integrations
No details available.
Integrations
No details available.
Pricing Details
No price information available.
Free Trial
No
Free Version
No
Pricing Details
€5/month
Academic access is €5/month; commercial use is €50/month.
Free Trial
Yes
Free Version
Yes
Deployment
Web-Based
No
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
Yes
Chromebook
No
Deployment
Web-Based
Yes
On-Premises
No
iPhone App
No
iPad App
No
Android App
No
Windows
Yes
Mac
Yes
Linux
No
Chromebook
No
Customer Support
Business Hours
Yes
Live Rep (24/7)
No
Online Support
Yes
Customer Support
Business Hours
No
Live Rep (24/7)
No
Online Support
Yes
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
No
In Person
Yes
Types of Training
Training Docs
Yes
Webinars
No
Live Training (Online)
Yes
In Person
Yes
Vendor Details
Company Name
10x Genomics
Founded
2012
Country
United States
Website
www.10xgenomics.com/support/software/loupe-browser/latest
Vendor Details
Company Name
Fearless League
Founded
2023
Country
Netherlands
Website
fearlessleague.com