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Average Ratings 0 Ratings

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Description

Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.

Description

Photo51 serves as an online molecular biology platform tailored for the design and examination of DNA and protein sequences. This comprehensive suite facilitates various tasks such as plasmid design, automated feature annotation, virtual cloning, PCR primer development, and simulating agarose gel electrophoresis. Users have the capability to import sequence files and utilize a built-in genome browser to navigate reference genomes, analyze gene views, and export sequences for their projects. Other features offered include the design of guide RNA with PAM visualization, pairwise and multiple sequence alignment, viewing of Sanger chromatograms, protein alignment, and reverse translation capabilities. Additionally, Photo51 fosters collaboration through shared team workspaces and maintains a version history for ongoing projects. The open-access genome browser enhances the exploration of genomic data, while subscription options unlock further editing and analytical functionalities. This platform is specifically designed for researchers, educators, and teams in biotechnology engaged in molecular biology tasks, promoting a streamlined workflow for various scientific inquiries. Overall, Photo51 stands out as a versatile tool that supports the diverse needs of the molecular biology community.

API Access

Has API No 

API Access

Has API No 

Screenshots View All

Screenshots View All

Integrations

No details available.

Integrations

No details available.

Pricing Details

No price information available.
Free Trial No 
Free Version No 

Pricing Details

€5/month
Academic access is €5/month; commercial use is €50/month.
Free Trial Yes 
Free Version Yes 

Deployment

Web-Based No 
On-Premises No 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac Yes 
Linux Yes 
Chromebook No 

Deployment

Web-Based Yes 
On-Premises No 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac Yes 
Linux No 
Chromebook No 

Customer Support

Business Hours Yes 
Live Rep (24/7) No 
Online Support Yes 

Customer Support

Business Hours No 
Live Rep (24/7) No 
Online Support Yes 

Types of Training

Training Docs Yes 
Webinars No 
Live Training (Online) No 
In Person Yes 

Types of Training

Training Docs Yes 
Webinars No 
Live Training (Online) Yes 
In Person Yes 

Vendor Details

Company Name

10x Genomics

Founded

2012

Country

United States

Website

www.10xgenomics.com/support/software/loupe-browser/latest

Vendor Details

Company Name

Fearless League

Founded

2023

Country

Netherlands

Website

fearlessleague.com

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