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Description

Created within the Data Sciences Platform at the Broad Institute, this comprehensive toolkit provides an extensive array of features primarily aimed at variant discovery and genotyping. With its robust processing engine and high-performance computing capabilities, it is equipped to manage projects of any magnitude. The GATK has established itself as the industry benchmark for detecting SNPs and indels in both germline DNA and RNA sequencing data. Its functionalities are now broadening to encompass somatic short variant detection as well as addressing copy number variations (CNV) and structural variations (SV). Besides the core variant callers, the GATK incorporates numerous utilities for executing associated tasks, including the processing and quality assurance of high-throughput sequencing data, and it comes bundled with the well-known Picard toolkit. Originally designed for exome and whole genome data generated via Illumina sequencing technology, these tools are versatile enough to be modified for use with various other technologies and study designs. As research evolves, the adaptability of the GATK ensures it remains relevant in diverse genomic investigations.

Description

Enhance research outcomes while boosting team efficiency by utilizing interactive data visualization to extend both private and public datasets among various teams. Rosalind stands out as the sole multi-tenant SaaS platform tailored for scientists, enabling the analysis, interpretation, sharing, planning, validation, and generation of new hypotheses with ease. It offers code-free visualization and employs AI for interpretation, fostering top-tier collaboration among users. Regardless of their expertise, scientists can leverage ROSALIND effectively, as it requires no programming or bioinformatics knowledge. The platform serves as a robust discovery tool and data hub, seamlessly integrating experiment design, quality control, and pathway analysis. ROSALIND's advanced infrastructure automatically orchestrates tens of thousands of compute cores and manages petabytes of storage, scaling resources dynamically for each experiment to ensure timely results. Furthermore, scientists can effortlessly share their findings with peers worldwide, complete with audit tracking to prioritize interpretation over data processing, thereby fostering a more collaborative research environment. This unique combination of features empowers researchers to focus on innovation and scientific discovery.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

Docker

Integrations

Docker

Pricing Details

Free
Free Trial
Free Version

Pricing Details

$3,250 per month
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Broad Institute

Country

United States

Website

gatk.broadinstitute.org/hc/

Vendor Details

Company Name

ROSALIND

Founded

2013

Country

United States

Website

www.rosalind.bio/

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