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Description

Cufflinks is a software tool that compiles transcripts, estimates their levels of abundance, and evaluates differential expression and regulation in RNA-Seq datasets. By accepting aligned RNA-Seq reads, it organizes these alignments into a streamlined representation of transcripts. The software then assesses the relative abundances of these transcripts based on the number of supporting reads, while also factoring in potential biases from library preparation methods. Initially created through a collaboration with the Laboratory for Mathematical and Computational Biology, Cufflinks aims to simplify the installation process by offering several binary packages that alleviate the often cumbersome task of building the software from source, which necessitates the installation of various libraries. This toolset encompasses multiple utilities tailored for analyzing RNA-Seq experiments, with some functionalities available independently and others designed to fit into a more comprehensive workflow. Overall, Cufflinks serves as a vital resource for researchers in the field of genomics, enhancing their ability to interpret RNA-Seq data effectively.

Description

Rather than overseeing your own data centers, leverage Microsoft's extensive experience and scale in managing exabyte-level workloads. With Microsoft Genomics hosted on Azure, you gain access to the performance and scalability of a top-tier supercomputing facility, available on-demand in the cloud environment. Benefit from a backend network that boasts MPI latency of less than three microseconds and a non-blocking throughput of 32 gigabits per second (Gbps). This advanced network features remote direct memory access technology, allowing parallel applications to effectively scale to thousands of cores. Azure equips you with high memory and HPC-class CPUs designed to accelerate your results significantly. You can easily adjust your resources up or down according to your needs and only pay for what you consume, helping to manage costs efficiently. Address data sovereignty concerns with Azure's global network of data centers while ensuring compliance with regulatory requirements. Integration into your current pipeline is seamless, thanks to a REST-based API along with a straightforward Python client, making it easy to enhance your workflows. Additionally, this flexibility allows you to respond swiftly to changing demands in your projects.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

Microsoft Azure
Python

Integrations

Microsoft Azure
Python

Pricing Details

Free
Free Trial
Free Version

Pricing Details

No price information available.
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Cole Trapnell

Founded

2017

Country

United States

Website

cole-trapnell-lab.github.io/cufflinks/

Vendor Details

Company Name

Microsoft

Founded

1975

Country

United States

Website

azure.microsoft.com/en-us/products/genomics/

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