Loupe Browser Description
Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.
Loupe Browser Alternatives
800.com
Turn the world into your office. 800.com allows you to manage your business from your cell phone. No contract, advanced calling features, forwarding for cell phones, and advanced calling features Increase conversions, brand recall, higher call response, and SMS messaging. Manage extensions, send professional greetings and manage your account online. 800.com offers standard forwarding as well as simultaneous and sequential ringing. Toll free numbers are the best standard for telephone numbers and will be taken seriously by US customers. Local numbers signal that your company isn't focused on doing business in the entire country. Every 800.com member has access to every phone system tool, regardless of the plan they choose. You will not only help your customers avoid long distance fees but also your company.
Learn more
BrandMap® 10
Worldwide, professional researchers prefer a user-friendly and swift tool for the analysis and creation of presentation-ready biplots, correspondence maps, mdpref, and MCA maps. This powerful 64-bit software is compatible with both PCs and MACs. Our unique Brand Projector I enables users to compute and visually represent the necessary attribute alterations for repositioning a brand (column) to any desired location on a map. In addition, Brand Projector II offers researchers the ability to modify attributes (rows) interactively, allowing them to observe the corresponding movement of the brand (column) in real-time. This dynamic interaction enhances the understanding of brand positioning strategies significantly.
Learn more
Parse Biosciences Evercode
Combinatorial barcoding technology revolutionizes the outdated limitations of traditional single-cell methodologies. By eliminating the need for specialized instruments, it empowers researchers to make groundbreaking discoveries with ease. This innovation allows for the profiling of anywhere from 1,000 to 1 million cells or nuclei in a single experiment, driving forward unparalleled advancements in science. Evercode combinatorial barcoding technology significantly outperforms droplet-based methods, enabling researchers to increase the scale of their experiments without the constraints of previous technologies. Enjoy enhanced data quality while avoiding the complexities and requirements of outdated hardware. Conduct single-cell experiments using only a pipette and standard laboratory tools, simplifying the process and making it more accessible. The split-pool combinatorial barcoding technique facilitates scalable single-cell analysis without relying on any specialized instruments, making it easier than ever to achieve scalable sequencing. Each kit includes a comprehensive set of reagents and user-friendly analysis software, streamlining the entire workflow from start to finish for optimal efficiency. This technology not only enhances research capabilities but also fosters a new era of accessibility in scientific exploration.
Learn more
BioTuring Browser
Delve into a vast collection of meticulously curated single-cell transcriptome datasets, as well as your own, using dynamic visualizations and analytical tools. This software is versatile, accommodating multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomics. Engage with the most extensive single-cell expression database globally, where you can access and extract insights from a repository featuring millions of fully annotated cells complete with cell type labels and experimental metadata. Beyond merely serving as a conduit to published research, BioTuring Browser functions as a comprehensive end-to-end solution tailored for your specific single-cell data needs. Easily import your fastq files, count matrices, or Seurat and Scanpy objects to uncover the biological narratives contained within. With an intuitive interface, you can access an extensive array of visualizations and analyses, transforming the process of extracting insights from any curated or personal single-cell dataset into a seamless experience. Additionally, the platform allows for the importation of single-cell CRISPR screening or Perturb-seq data, enabling users to query guide RNA sequences with ease. This functionality not only enhances research capabilities but also facilitates the discovery of novel biological insights.
Learn more
Integrations
No Integrations at this time
Company Details
Company:
10x Genomics
Year Founded:
2012
Headquarters:
United States
Website:
www.10xgenomics.com/support/software/loupe-browser/latest
Media
Recommended Products
Comprehensive Cybersecurity to Safeguard Your Organization | SOCRadar
Protect your organization from cyber threats with SOCRadar’s cutting-edge threat intelligence. Gain 360° visibility into your digital assets, monitor the dark web, and stay ahead of hackers with real-time insights. Start for free and transform your cybersecurity today.
Product Details
Platforms
Windows
Mac
Linux
Types of Training
Training Docs
In Person
Training Videos
Customer Support
Business Hours
Online Support
Loupe Browser Features and Options
Loupe Browser User Reviews
Write a Review- Previous
- Next