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Description
Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.
Description
Introducing an innovative reactive notebook designed for Python, which allows you to conduct repeatable experiments, run scripts seamlessly, launch applications, and manage versions using git.
🚀 Comprehensive: it serves as a substitute for jupyter, streamlit, jupytext, ipywidgets, papermill, and additional tools.
⚡️ Dynamic: when you execute a cell, marimo automatically runs all related cells or flags them as outdated.
🖐️ Engaging: easily connect sliders, tables, and plots to your Python code without the need for callbacks.
🔬 Reliable: ensures no hidden states, guarantees deterministic execution, and includes built-in package management for consistency.
🏃 Functional: capable of being executed as a Python script, allowing for customization via CLI arguments.
🛜 Accessible: can be transformed into an interactive web application or presentation, and functions in the browser using WASM.
🛢️ Tailored for data: efficiently query dataframes and databases using SQL, plus filter and search through dataframes effortlessly.
🐍 git-compatible: stores notebooks as .py files, making version control straightforward.
⌨️ A contemporary editor: features include GitHub Copilot, AI helpers, vim keybindings, a variable explorer, and an array of other enhancements to streamline your workflow.
With these capabilities, this notebook elevates the way you work with Python, promoting a more efficient and collaborative coding environment.
API Access
Has API
API Access
Has API
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Integrations
Python
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Free Trial
Free Version
Pricing Details
$0
Free Trial
Free Version
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Vendor Details
Company Name
10x Genomics
Founded
2012
Country
United States
Website
www.10xgenomics.com/support/software/loupe-browser/latest
Vendor Details
Company Name
marimo
Founded
2022
Country
United States
Website
marimo.io
Product Features
Product Features
Application Development
Access Controls/Permissions
Code Assistance
Code Refactoring
Collaboration Tools
Compatibility Testing
Data Modeling
Debugging
Deployment Management
Graphical User Interface
Mobile Development
No-Code
Reporting/Analytics
Software Development
Source Control
Testing Management
Version Control
Web App Development