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Description
Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.
Description
In QDeFuZZiner software, the fundamental unit is referred to as a project, which encompasses the definitions of two source datasets for import and analysis, known as the "left dataset" and "right dataset." Each project not only includes these datasets but also a variable number of solutions that detail the methodology for conducting fuzzy match analysis. Upon creation, every project is assigned a distinct project tag, which is subsequently appended to the names of the corresponding input tables during the raw data import process. This tagging system guarantees that the imported tables maintain uniqueness through association with their respective project names. Furthermore, during the import phase and later when generating and executing solutions, QDeFuZZiner establishes various indexes on the PostgreSQL database, thereby enhancing the efficiency of fuzzy data matching procedures. The datasets themselves can be sourced from spreadsheet formats such as .xlsx, .xls, .ods, or from CSV (comma separated values) flat files, which are uploaded to the server database, leading to the creation, indexing, and processing of the associated left and right database tables. This structured approach not only simplifies data management but also streamlines the analysis process, making it easier for users to derive insights from their datasets.
API Access
Has API
API Access
Has API
Integrations
PostgreSQL
Pricing Details
No price information available.
Free Trial
Free Version
Pricing Details
No price information available.
Free Trial
Free Version
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Deployment
Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Customer Support
Business Hours
Live Rep (24/7)
Online Support
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Types of Training
Training Docs
Webinars
Live Training (Online)
In Person
Vendor Details
Company Name
10x Genomics
Founded
2012
Country
United States
Website
www.10xgenomics.com/support/software/loupe-browser/latest
Vendor Details
Company Name
QDeFuZZiner
Website
zmatasoft.wixsite.com/qdefuzziner/qdefuzziner-software-features