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Average Ratings 0 Ratings

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ease
features
design
support

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Write a Review

Description

Loupe Browser stands out as a robust visualization tool, offering the user-friendly capabilities essential for delving into and interpreting 10x Genomics Chromium and Visium datasets. Additionally, the LoupeR package facilitates the transformation of Seurat objects into files compatible with Loupe Browser. The interactive features of the Loupe Browser interface are exemplified through its use of a lung squamous cell carcinoma dataset. Central to the user experience is the view panel, where individual points, each representing cell barcodes, are displayed across multiple projections. Each point typically corresponds to a single cell’s barcode, enabling focused analysis. The t-SNE plot generated by the cell ranger pipeline serves as the default projection, while alternative visualization options are also accessible. Users can effortlessly reposition the plot by dragging the mouse over the cells and can zoom in or out using the mouse wheel or trackpad. Moreover, as the mouse hovers over the plot, cluster labels become visible, which proves particularly beneficial when working with datasets that contain numerous precomputed clusters. This capability enhances the analytical experience, making it easier to identify and interpret complex data patterns.

Description

You can empower team collaboration without putting data at risk. Pydio Cells is an open-source, self-hosted document sharing platform with security built in. Do you have complex security and compliance issues in your organization? SaaS solutions might be an option for you. Pydio Cells allows you to fully control your document sharing environment. It combines fast performance, large file transfer sizes, granular cybersecurity, advanced workflow automation, and granular security in an easy-to set-up and easy to support self-hosted platform. Centralized document access via workspaces or cells. Near-zero user learning curve. Secure mobile-native access via Pydio app for Android and iOS. Cells Flows automates common workflows in order to increase productivity. Massive document transfer is seamless. Fully scalable for big data. Secure and easy SSO integration via OPEN ID. Active Directory. LDAP. SAML. All document sources can be unified and bridged using hardened API. Cells Flows automates tedious, time-consuming tasks.

API Access

Has API No 

API Access

Has API No 

Screenshots View All

Screenshots View All

Integrations

InterServer No 
LDAP No 

Integrations

InterServer Yes 
LDAP Yes 

Pricing Details

No price information available.
Free Trial No 
Free Version No 

Pricing Details

No price information available.
Free Trial Yes 
Free Version Yes 

Deployment

Web-Based No 
On-Premises No 
iPhone App No 
iPad App No 
Android App No 
Windows Yes 
Mac Yes 
Linux Yes 
Chromebook No 

Deployment

Web-Based No 
On-Premises No 
iPhone App Yes 
iPad App Yes 
Android App Yes 
Windows Yes 
Mac Yes 
Linux No 
Chromebook No 

Customer Support

Business Hours Yes 
Live Rep (24/7) No 
Online Support Yes 

Customer Support

Business Hours Yes 
Live Rep (24/7) No 
Online Support No 

Types of Training

Training Docs Yes 
Webinars No 
Live Training (Online) No 
In Person Yes 

Types of Training

Training Docs Yes 
Webinars No 
Live Training (Online) Yes 
In Person No 

Vendor Details

Company Name

10x Genomics

Founded

2012

Country

United States

Website

www.10xgenomics.com/support/software/loupe-browser/latest

Vendor Details

Company Name

Pydio

Founded

2012

Country

France

Website

pydio.com/en

Product Features

File Sharing

Audit Trail Yes 
Chat / Messaging Yes 
Collaboration Yes 
Document Management Yes 
Drag & Drop Yes 
Electronic Signature No 
Encryption Yes 
File Synchronization Yes 
Search Yes 
User Management Yes 
Version Control Yes 
Workflow Management Yes 

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Alternatives

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