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Description

Created within the Data Sciences Platform at the Broad Institute, this comprehensive toolkit provides an extensive array of features primarily aimed at variant discovery and genotyping. With its robust processing engine and high-performance computing capabilities, it is equipped to manage projects of any magnitude. The GATK has established itself as the industry benchmark for detecting SNPs and indels in both germline DNA and RNA sequencing data. Its functionalities are now broadening to encompass somatic short variant detection as well as addressing copy number variations (CNV) and structural variations (SV). Besides the core variant callers, the GATK incorporates numerous utilities for executing associated tasks, including the processing and quality assurance of high-throughput sequencing data, and it comes bundled with the well-known Picard toolkit. Originally designed for exome and whole genome data generated via Illumina sequencing technology, these tools are versatile enough to be modified for use with various other technologies and study designs. As research evolves, the adaptability of the GATK ensures it remains relevant in diverse genomic investigations.

Description

OmnibusX is a no-code multi-omics data analysis platform designed for academic labs and pharmaceutical R&D teams. It enables researchers to transform raw biological data into publication-ready insights through a unified and intuitive interface. The platform supports a wide range of data types, including scRNA-seq, scATAC-seq, bulk RNA-seq, spatial transcriptomics, and metagenomics. OmnibusX eliminates the need for complex coding and multiple tools by centralizing workflows and datasets in one place. It offers tailored analysis pipelines and interactive visualizations such as UMAP and t-SNE for deeper data exploration. Users can generate high-quality, customizable figures suitable for journal submissions directly within the platform. By simplifying complex bioinformatics processes, OmnibusX accelerates research and discovery for scientists worldwide.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

Amazon S3
Docker
Python

Integrations

Amazon S3
Docker
Python

Pricing Details

Free
Free Trial
Free Version

Pricing Details

$45/month/user
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Broad Institute

Country

United States

Website

gatk.broadinstitute.org/hc/

Vendor Details

Company Name

OmnibusX Company Limited

Founded

2024

Country

Vietnam

Website

omnibusx.com

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