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Description

Created within the Data Sciences Platform at the Broad Institute, this comprehensive toolkit provides an extensive array of features primarily aimed at variant discovery and genotyping. With its robust processing engine and high-performance computing capabilities, it is equipped to manage projects of any magnitude. The GATK has established itself as the industry benchmark for detecting SNPs and indels in both germline DNA and RNA sequencing data. Its functionalities are now broadening to encompass somatic short variant detection as well as addressing copy number variations (CNV) and structural variations (SV). Besides the core variant callers, the GATK incorporates numerous utilities for executing associated tasks, including the processing and quality assurance of high-throughput sequencing data, and it comes bundled with the well-known Picard toolkit. Originally designed for exome and whole genome data generated via Illumina sequencing technology, these tools are versatile enough to be modified for use with various other technologies and study designs. As research evolves, the adaptability of the GATK ensures it remains relevant in diverse genomic investigations.

Description

Rather than overseeing your own data centers, leverage Microsoft's extensive experience and scale in managing exabyte-level workloads. With Microsoft Genomics hosted on Azure, you gain access to the performance and scalability of a top-tier supercomputing facility, available on-demand in the cloud environment. Benefit from a backend network that boasts MPI latency of less than three microseconds and a non-blocking throughput of 32 gigabits per second (Gbps). This advanced network features remote direct memory access technology, allowing parallel applications to effectively scale to thousands of cores. Azure equips you with high memory and HPC-class CPUs designed to accelerate your results significantly. You can easily adjust your resources up or down according to your needs and only pay for what you consume, helping to manage costs efficiently. Address data sovereignty concerns with Azure's global network of data centers while ensuring compliance with regulatory requirements. Integration into your current pipeline is seamless, thanks to a REST-based API along with a straightforward Python client, making it easy to enhance your workflows. Additionally, this flexibility allows you to respond swiftly to changing demands in your projects.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

Docker
Microsoft Azure
Python

Integrations

Docker
Microsoft Azure
Python

Pricing Details

Free
Free Trial
Free Version

Pricing Details

No price information available.
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Broad Institute

Country

United States

Website

gatk.broadinstitute.org/hc/

Vendor Details

Company Name

Microsoft

Founded

1975

Country

United States

Website

azure.microsoft.com/en-us/products/genomics/

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