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Description

Created within the Data Sciences Platform at the Broad Institute, this comprehensive toolkit provides an extensive array of features primarily aimed at variant discovery and genotyping. With its robust processing engine and high-performance computing capabilities, it is equipped to manage projects of any magnitude. The GATK has established itself as the industry benchmark for detecting SNPs and indels in both germline DNA and RNA sequencing data. Its functionalities are now broadening to encompass somatic short variant detection as well as addressing copy number variations (CNV) and structural variations (SV). Besides the core variant callers, the GATK incorporates numerous utilities for executing associated tasks, including the processing and quality assurance of high-throughput sequencing data, and it comes bundled with the well-known Picard toolkit. Originally designed for exome and whole genome data generated via Illumina sequencing technology, these tools are versatile enough to be modified for use with various other technologies and study designs. As research evolves, the adaptability of the GATK ensures it remains relevant in diverse genomic investigations.

Description

Gain valuable insights into your company's operations without the burden of a complicated project. Regardless of the number of systems and data sources involved in your processes, our collaboration with Denodo and data virtualization allows us to track everything seamlessly from beginning to end. With our adaptable APIs and connectors, you can quickly set up and start working. The intuitive interface, along with pre-built filters and an easy-to-master query language, enables you to concentrate on the essential aspects: the processes rather than the tools themselves. Uncover the dynamics of your processes by beginning with the most frequently executed tasks and gradually broadening your perspective to include all variations. You can select the number of variants to aggregate and display frequency and duration metrics, providing you with unparalleled insights into the true performance of your process model. In a matter of moments, the contextual information panel will help you pinpoint outliers and extreme variants, allowing you to delve deeper into the hidden intricacies of your organization. This newfound knowledge can empower you to make informed decisions and drive improvements across your operations.

API Access

Has API

API Access

Has API

Screenshots View All

Screenshots View All

Integrations

Denodo
Docker

Integrations

Denodo
Docker

Pricing Details

Free
Free Trial
Free Version

Pricing Details

€500 per month
Free Trial
Free Version

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Deployment

Web-Based
On-Premises
iPhone App
iPad App
Android App
Windows
Mac
Linux
Chromebook

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Customer Support

Business Hours
Live Rep (24/7)
Online Support

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Types of Training

Training Docs
Webinars
Live Training (Online)
In Person

Vendor Details

Company Name

Broad Institute

Country

United States

Website

gatk.broadinstitute.org/hc/

Vendor Details

Company Name

Inverbis

Founded

2020

Country

Spain

Website

web.inverbisanalytics.com

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