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Guaranteed Transmission Protocols For Windows? 536

Michael writes "Part of our business at my work involves transferring mission critical files across a 2 mbit microwave connection, into a government-run telecommunications center with a very dodgy internal network and then finally to our own server inside the center. The computers at both ends run Windows. What sort of protocols or tools are available to me that will guarantee to get the data transferred across better than a straight Windows file system copy? Since before I started working here, they've been using FTP to upload the files, but many times the copied files are a few kilobytes smaller than the originals."

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