In the hacker community, the self-taught hacker is often better respected than his academically-shaped peer
That's just something autodidacts tell themselves to make themselves feel important.
and the reason has nothing to do with a disrespect of education
Sure about that? See any of the recent "is college useless" slashdot discussions.
but rather an implicit understanding that you just don't learn as well unless you're interested in the material and follow your own path through it.
That's the biggest problem with autodidacts. They tend to ignore important material that they don't have an interest in, don't immediately understand, or disagree with (because it doesn't appeal to their intuition or runs contrary to their existing beliefs.)
They end up believing themselves experts in a topic, when in reality they're less informed than a hipster Starbucks barista that took an undergrad course in the same subject.
Now, computer programming is a special case. Any kid can teach themselves computer programming -- hell, in the 80's, a lot of kids did! -- and even make a career out of it with very little effort. Just like a backyard mechanic can find work in a repair shop. The difference, of course, is that the mechanics don't fancy themselves engineers.
Programming is the easiest thing I've ever done. That a fact that many (most?) developers know but don't want to state publicly. They've got too much of their self-worth wrapped up in it. They want to continue to pretend that they're special in some way (more rational, intelligent, whatever) because they can write computer programs.
That insecurity is a problem only the autodidacts face. The educated take pride in what they've actually accomplished, not in the knowledge they have or the skills they've acquired. They know that anyone can learn (or learn to do) what they have learned, so they don't believe their knowledge and skills alone make them special or important.
Quote Eric S. Raymond all you want, but you won't find too much respect for autodidact "physicists" in the physics community or any in his silly little list of "academic areas". (I find it laughable that you refer to him as a "social anthropologist". He's not. Not even close. He's just another under-educated autodidact pandering to other under-educated autodidacts. It's sad, really.)