I don't think you fully understand how this type of setup works in a University - this type of billing setup is common in the labs and departmental machine shops at my uni. It's important to keep in mind that even within a department there are a number of fairly independent faculty members and their research groups who win grants to do their work and buy equipment with this grant money for their labs, and then there may be multiple departments within a single building. Overhead charged to research grants helps pay for the building maintenance and department staff but usually doesn't generally pay for any upkeep of equipment, supplies, or staffing of any of the research labs.
If a professor lets other people use his equipment without paying for it then lots of people will want to use it (because it's free) and it can become a money sink where the professor who owns the equipment is paying for all supplies and upkeep but he can't enforce oversight of the equipment because there's no cost recovery to pay for a tech or grad student to maintain the tool, train new users, and watch over usage. Since there's no oversight parts will get misplaced, people will mistreat it and damage the tool. I've seen it happen. So they need to charge other users something, to fairly allocate cost it might as well be hourly.
If there is a group of professors who all benefit from each others' labs then they can share access equally, and each professor is responsible for the cost of maintaining and staffing their lab, much like a network peering arrangement. But if it's a very one-sided sharing then charging for access makes a lot of sense, otherwise one professor ends up subsidizing the others.