I'm sure they've thought of that. This isn't really a new idea, and the use of beamed power engines that switch from using atmosphere to carried fuel isn't new either (you can even use it in Kerbal Space Program with the right mods). The problem is that the molecular mass of air is quite high, and that reduces your specific impulse and thrust for a given power input. So to get the same thrust with air you'd need a bigger transmitter (probably much bigger). With rockets you usually need your highest thrust early on, because you're lifting more fuel, gravity is stronger, and you need to go more or less straight up. Later on you can get by with less thrust. Unfortunately, that's the opposite of what an air/fuel switching beamed power engine provides. You can get around that using a spaceplane design, but you still need to get up to speed and altitude while in range of your ground station... or build more ground stations.
They're probably looking at getting something working first, then building out the infrastructure to do more. That fits in with their plan to make a suborbital ship first: if you go basically straight up you're always in range of a single ground station, but you can't get into orbit.